Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00317 ATGCAAAGATTCCATCTTGGTATctctcaaaatcaaaacttgatgatggattcttcttcatctcctcTTTCTCTTCAACCCCAAAAATCACCTTTTCAAGACCCACTTGAACAATCCTcaccaaaacaaaccaaaaaaagcTTACTTTCTTCTCTAATGGGTAgtactaacaataacaacactTCTTCAACCCTTAGAACACCTTCTTTTGAAGAAGATAACTACTTTGTTACTCTTCTCAAATCCTCAGAGAAAAAAGCACTTCAAGACCTCAAAAAAAACCTTCTTGAAGCAACTTCTAATGGAGTTGAAGTTGGTGTTTCCATGTGGGGTATTCCTCTTCTTGGTGGTGATGATAGAGCTGATGTAATCCTCTTGAAATTCCTTAGAGCAAGAGATTTTAGAGTTAATGAAGCACTAAACATGATTATAAAGTGTTTAGCTTGGAGAAAAGAGTTTAATGCTGATACAATAGTTGAAGAAGATTTAAGTCAGTTCAAAGAGCTTGAAGGTGTTATAGCTTATATGCAAGGCTATGACAAAGAGGGTCATCCTGTTTGTTACAATGCTTATGGTTTGTTTAGAGATAAAGAAATGTATGAGAGAATTTTTGGTGATGAAGAAAAGCTTAAGATGTTTCTTAGATGGAGAGTTCAAGTTCTTGAAAGAGGTATTAGGCTTCTTCATTTTAAGCCTGGTGGTGTTAATTCTCTTATTCAAGTGACTGATCTTAAAGATATGCCTAAAAGAGAATTAAGGGTTGCTTCTAACCATATCATGTCACTCTTTCAAGATAACTACCCTGAAATGGTCGCTAGAAAGATTTTCATCAATGTGCCATGGTACTTCAGCATGTTGTATTCAATGTTTAGTCCATTTTTGACACAAAGGACTAAGAGCAAGTTTGTGATCTCAAAGGAAGGAAATGCTGCTGAGACGCTCTACAAATTCATTAGACCTGAGGATATTCCTGTTCAGTATGGAGGGCTGAGTGTTCCAAGTGATTTGCAAAATGGTCCCCCGAAACCTGCTTCTGAATTCACTGTCAAAGGAGGGGAGAAAGTGAATATACAAATAGAAGGAATTGAGGGAGGTGCAACTATCACTTGGGACATTGTTGTGGGAGGTTGGGACTTAGAATACAGTGCTGAGTTTGTCCCAAATGCTGAAGGAAGCTACACTATAGCAGTTGAGAAGCCGAAAAAGATTGCAGCCTCAGAACCAGCAATTCACAACTCGTTCACATCAAAAGAATCGGGCAAAATGATACTCTCGGTCGACAACACTGCCTCTAGGAAGAAAAAAGTCGCTGCTTATCGTTACGTAGTCCGCAAATGCGCCACCACTTGA 1350 0.3622 MQRFHLGISQNQNLMMDSSSSPLSLQPQKSPFQDPLEQSSPKQTKKSLLSSLMGSTNNNNTSSTLRTPSFEEDNYFVTLLKSSEKKALQDLKKNLLEATSNGVEVGVSMWGIPLLGGDDRADVILLKFLRARDFRVNEALNMIIKCLAWRKEFNADTIVEEDLSQFKELEGVIAYMQGYDKEGHPVCYNAYGLFRDKEMYERIFGDEEKLKMFLRWRVQVLERGIRLLHFKPGGVNSLIQVTDLKDMPKRELRVASNHIMSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIPVQYGGLSVPSDLQNGPPKPASEFTVKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPKKIAASEPAIHNSFTSKESGKMILSVDNTASRKKKVAAYRYVVRKCATT 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00317 449 Coils Coil 81 101 - -
Tsu06g00317 449 MobiDBLite consensus disorder prediction 1 67 - -
Tsu06g00317 449 PANTHER PATELLIN-6 32 447 - -
Tsu06g00317 449 PANTHER PATELLIN-1 32 447 IPR044834 GO:0008289
Tsu06g00317 449 Gene3D GOLD domain 342 443 - -
Tsu06g00317 449 SUPERFAMILY CRAL/TRIO N-terminal domain 81 162 IPR036273 -
Tsu06g00317 449 SMART CRAL_TRIO_N_2 121 146 IPR011074 -
Tsu06g00317 449 SUPERFAMILY CRAL/TRIO domain 168 331 IPR036865 -
Tsu06g00317 449 Pfam CRAL/TRIO, N-terminal domain 98 145 IPR011074 -
Tsu06g00317 449 Pfam CRAL/TRIO domain 170 329 IPR001251 -
Tsu06g00317 449 Gene3D - 78 152 - -
Tsu06g00317 449 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 160 335 IPR001251 -
Tsu06g00317 449 SMART sec14_4 168 332 IPR001251 -
Tsu06g00317 449 CDD SEC14 163 330 IPR001251 -
Tsu06g00317 449 Gene3D - 155 341 IPR036865 -
Tsu06g00317 449 ProSiteProfiles GOLD domain profile. 311 445 IPR009038 -
Tsu06g00317 449 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 346 443 IPR036598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00317 Tsu-Chr6 2582814 2586412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00317 125 324 Acyl Lipid Metabolism Gene Families AT1G55840 27.014 2.61e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00317 - - gmx:100809944 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00317 06 2582814 2586412 Tsu06g00317 06 2582814 2586412 ECH
Tsu04g01463 04 15130431 15133493 Tsu06g00317 06 2582814 2586412 PCT