Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01463 ATGCCAAAATTCCATCTGGGTCTTTCTCAAATCCCTCATTCACCATCAATGGAAGAAGATCAACATCACTCTTCATCTTCCATGTCATTCCTCAGTACACCCTTAATACAAACTCCAAAACATCAACCTTCTCCTAAACCACAACACAAAAGAACCATAGTCACAACATTAATGGAAGCTGCAACTTTCACATCCACTTCTTTCAAAGAAGATACCTATTACATTTCCCATCTCAAATCTTCAGAGAAAAAAGCATTACAAGAGTTAAAGAAAAAGCTTTTATCTTCAGATGTGACAAGCCAAAATGCTTCTATGTGGGGTGTTTCTTTGCttaatgatgatgttgttgctgATGTGTTACTTTTGAAGTTTCTTAGAGCTAGAGACTTTAAAGTCAATGATGCATTCAACATGCTTGTGAAATGTCTTGTTTGGAGAAAAGAATTTGGTGCTGAAAATGTTGTGGATGAAGATTTGGGATTTAAAGAGCTTGAAGGTGTTGTTGCTTTTACACATGGATTTGATAGAGAAGGACACCCTGTGTGTTACAATCATTATGGTGTGTTCAAAGATAAGGATATGTTTGAGAGAATTTTTGGTGATGAAGACAAGTTGAACAAGTTTTTAAGGTGGAGGGTTCAAGTTCTCGAGAAAGGAATCAAGCTTTTACATTTTAAGCCTGGTGGTGTTAATTCTTTGATTCAAGTCACTGATCTTAAGGACATGCCTAAGAGAGAATTAAGGGCTGCCTCAAAAAAAATCCTTTCATTGTTTCAAGATAATTATCCTGAAATGGTTGCTCGGAAGATTTTCATCAATGTGCCATGGTATTTCAGCATGTTATATTCAATGTTTAGTCCATTTCTGACTCAAAGAACTAAGAGCAAGTTTGTGATATCTAAGGAAGGAAATTCTGCAGAAACACTCTACAAatttaTAAGGCCTGAGAATATTCCTGTTCAGTATGGAGGATTGAGTCGACCTAATGATTTTCAAAATGGTCCCCCAGAACCAGCTTCTGAGTTCACTGTTAAAGGAGGAGAAAAAGTAAACATACAAATAGAAGGAATTGAGAGTGGTGCAACAATCAAGTGGGAGATTGTAGTTGGAGGGTGGGATTTGGAATACAGTGCTGAATTTGTACCAAATGCAGAAAGTAGCTACACTATTGAAGTTGAAAAAGCAAGGAAAGTTGATGCATCAGAAGAAGCAATTCACACTTCATTCACATCAAAAGAAGCAGGCATAATGGTACTCTCAGTTGATAACTCTGCTTCTAGGAAGAAAAAAGTTTCTGCTTATCGCTATTTTGTCCGCAAACACAACAACAATACACCATCTGATATGCAATTAAGCCTCAAATAG 1365 0.3619 MPKFHLGLSQIPHSPSMEEDQHHSSSSMSFLSTPLIQTPKHQPSPKPQHKRTIVTTLMEAATFTSTSFKEDTYYISHLKSSEKKALQELKKKLLSSDVTSQNASMWGVSLLNDDVVADVLLLKFLRARDFKVNDAFNMLVKCLVWRKEFGAENVVDEDLGFKELEGVVAFTHGFDREGHPVCYNHYGVFKDKDMFERIFGDEDKLNKFLRWRVQVLEKGIKLLHFKPGGVNSLIQVTDLKDMPKRELRAASKKILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNSAETLYKFIRPENIPVQYGGLSRPNDFQNGPPEPASEFTVKGGEKVNIQIEGIESGATIKWEIVVGGWDLEYSAEFVPNAESSYTIEVEKARKVDASEEAIHTSFTSKEAGIMVLSVDNSASRKKKVSAYRYFVRKHNNNTPSDMQLSLK 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01463 454 MobiDBLite consensus disorder prediction 1 30 - -
Tsu04g01463 454 Gene3D - 160 334 IPR036865 -
Tsu04g01463 454 SMART sec14_4 163 327 IPR001251 -
Tsu04g01463 454 SUPERFAMILY CRAL/TRIO domain 162 327 IPR036865 -
Tsu04g01463 454 Gene3D - 57 149 - -
Tsu04g01463 454 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 157 330 IPR001251 -
Tsu04g01463 454 Pfam CRAL/TRIO domain 165 324 IPR001251 -
Tsu04g01463 454 Pfam CRAL/TRIO, N-terminal domain 85 141 IPR011074 -
Tsu04g01463 454 PANTHER PATELLIN-6 40 442 - -
Tsu04g01463 454 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 341 449 IPR036598 -
Tsu04g01463 454 SUPERFAMILY CRAL/TRIO N-terminal domain 68 157 IPR036273 -
Tsu04g01463 454 ProSiteProfiles GOLD domain profile. 306 440 IPR009038 -
Tsu04g01463 454 PANTHER PATELLIN-1 40 442 IPR044834 GO:0008289
Tsu04g01463 454 SMART CRAL_TRIO_N_2 117 142 IPR011074 -
Tsu04g01463 454 Gene3D GOLD domain 335 438 - -
Tsu04g01463 454 PRINTS Cellular retinaldehyde-binding protein signature 120 142 - -
Tsu04g01463 454 PRINTS Cellular retinaldehyde-binding protein signature 249 270 - -
Tsu04g01463 454 PRINTS Cellular retinaldehyde-binding protein signature 282 301 - -
Tsu04g01463 454 CDD SEC14 161 325 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01463 Tsu-Chr4 15130431 15133493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01463 121 319 Acyl Lipid Metabolism Gene Families AT1G55840 29.245 2.70e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01463 - - cam:101508309 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01463 04 15130431 15133493 Tsu04g01463 04 15130431 15133493 ECH
Tsu04g01463 04 15130431 15133493 Tsu06g00317 06 2582814 2586412 PCT