Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00315 ATGGAACCTACCGTAGCGAAGCCTGGCTTCCTTCGGAACGTTCTGGTACGTTTACTTCTCTTCGGCGTTTTCGTCGTTATTATTCGTTTTGCTTACATAATCACTCTCGCCGGCGAAACCTGTAACGTCGGAGATTTCTGTTTTTTCTCTTCGCCGGAGAAAATTAATGTAGCCGTTACCGGATCTGGTTCCGGTACCGGCGCCGGTACCGGTGCACTCTCTGTCCGATCCTCATCCGAATTAGCTTTACCGGTGCATCATGCAAGCAAAGATTGGATTAATGGAGTTCGATTTTACTCTTCCGTTTTTCAGAATATGATTGTTGCCGGTTATCTTTCACCGGAGGCGAAGTCTTTGTGTGTTGATACGGTTACTGGAAGGGATGTGTTTGCGTTGAAGGAGATCGGTGTTGTTGATTCGGTTGGGATATCGAAGAAAGCGTTGAAGCCGTTGGTGAAATCCGGTGAAGGTCATAGGATTCCGTTTGGTAATAACAcgtttgattttgtgttttctGGTGATGGAGGATTGGAGAGAACAGTGAAACCGTTTGAATTTGCGATTGAGATCGCGAGGACGCTGAAACCCGAAGGGTTTGCAGTGTTTCATGTAAAGACTAAAGATTCTTACAGTTACAATTCATTTgttgatttgtttaaattttgttgCAGTGTAGTGAAATTTAATGATATTCAAGGTTTCGATGATTCGATGCCTGAGATAAGAGAAATTGTTGTGAAGAAAATCGGATATAGAAATATTGATTCTGATATTAATTTGATTGAGAATAAGAAGTGTAATCTTGCAGGGTATAAGAGAGAATTGGTTAAGAATGCTGAGGAATTGATTGAAGAGGAACCATTGAAACCATGGATAACCCTAAAGAAGAATGTGAAGAACATAAAGTATGCATCTTCGATGGTTGATATAAGCTTTAAGAGTAGATATGTGTATGTTGATGTTGGAGCTAGAAGCTATGGTTCAAGCATTGGAAGCTGGTTTAAGAAACAGTATccgaaacaaaataaaacttttcATGTTTACGCAATTGAAGCTGATAAAGCTTTTCATCAAGAGTATGCGATGAAAAAAGGGGTAACTTTGTTACCTTATGCTGCATGGGTTAAGAATGAGAGTTTGGTTTTCGAAATTAACAACGACCCGGGTgataaaaagaaagagaaagtagGGAGAGGAATGGGAAGGATTCAACCGTTGGATTCTCagggtggtggtggtggcggtGTTCAGAAGATACAAGGGTTTGATTTTGCTGAATGGTTGAAGAACACGGTTACAATGAATGATTTCGTTGTGATGAAAATGGATGTGGAAGGTActgaatttgatttgattcctAGGTTGTTTGAAACCGGTGCGATTTGTTTGGTTGATGAGATTTTTCTTGAGTGTCATTATAATAGATGGCAGAGGTGTTGTCCTGGACAAAGAAGTCCTAAGTATGAGAAAACTTATGATCAATGTTTGCAGCTTTTCAATTCTCTTAGACAAAGTGGTGTTCTTGTTCATCAATGGTTTTAG 1542 0.3709 MEPTVAKPGFLRNVLVRLLLFGVFVVIIRFAYIITLAGETCNVGDFCFFSSPEKINVAVTGSGSGTGAGTGALSVRSSSELALPVHHASKDWINGVRFYSSVFQNMIVAGYLSPEAKSLCVDTVTGRDVFALKEIGVVDSVGISKKALKPLVKSGEGHRIPFGNNTFDFVFSGDGGLERTVKPFEFAIEIARTLKPEGFAVFHVKTKDSYSYNSFVDLFKFCCSVVKFNDIQGFDDSMPEIREIVVKKIGYRNIDSDINLIENKKCNLAGYKRELVKNAEELIEEEPLKPWITLKKNVKNIKYASSMVDISFKSRYVYVDVGARSYGSSIGSWFKKQYPKQNKTFHVYAIEADKAFHQEYAMKKGVTLLPYAAWVKNESLVFEINNDPGDKKKEKVGRGMGRIQPLDSQGGGGGGVQKIQGFDFAEWLKNTVTMNDFVVMKMDVEGTEFDLIPRLFETGAICLVDEIFLECHYNRWQRCCPGQRSPKYEKTYDQCLQLFNSLRQSGVLVHQWF 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00315 513 Gene3D Vaccinia Virus protein VP39 270 477 IPR029063 -
Tsu06g00315 513 Gene3D Vaccinia Virus protein VP39 127 248 IPR029063 -
Tsu06g00315 513 Pfam Methyltransferase FkbM domain 320 479 IPR006342 -
Tsu06g00315 513 Pfam Methyltransferase domain 153 202 IPR013216 GO:0008168
Tsu06g00315 513 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 155 213 IPR029063 -
Tsu06g00315 513 PANTHER METHYLTRANSFERASE 1 513 - -
Tsu06g00315 513 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 262 455 IPR029063 -
Tsu06g00315 513 PANTHER METHYLTRANSFERASE 1 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00315 Tsu-Chr6 2562850 2565115 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00315 - - gmx:121174389 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00315 06 2562850 2565115 Tsu06g00315 06 2562850 2565115 ECH
Tsu04g01466 04 15156302 15158542 Tsu06g00315 06 2562850 2565115 PCT