Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00258 ATGGAGCTTATTTCGGGTCTACCCGAGGATGTGGCCCGAGACTGTTTAATTCGAGTTTCATACCAACAGTTTCCGACTGTGGCAGCGGTTTGTAAAGGGTGGAAGACGGAGATTCATACGCCGGAGTTTCACCGTCAACGGCGGAGAACAGGACAGTCTCAGAAAATTCTAGTGATGGTTCAAGCAAAGGTTGAACCGGAGAAAACAGAAACGGGTTCGACAAAAAGATTAACAAACCCGGTTTATATGCTCAGTGTTTTTGAGCCGGAAACGGGTTTTTGGAGTGAATTACCGGCTCCACCCGGTTACGGTTCAGGTTTACCGTTGATGTGTCAGTTAGCATGTGTTGGTTATGATCTTGTTGTATTGGGTGGGTTGGATCCATATACATGGAAAGCATCAAATTCGGtgtttgtttataatttcttgTCGGCGAAATGGCGCCGTGGGACCCACATGCCAGGTGGACCTCGCACATTTTTCGCCTGTTCATCGGATAACTACCGGACAATTTTTGTAGCGGGTGGTCATGATGATGAGAAAAATGCGCTGAGATCTGCTTTGGCATATGATGTGGTGGAGGATAAATGGACTGAGTTGCCGAATATGTCGTCGGTGCGCGACGAGTGTAAGGCGGTGTTCCGCCGTGGAAAGTTTATTGTAGTCGGTGGTTACACGACGGAGAATCAAGGAAGGTTTGAAAGAAGTGCGGAAGCTTTTGATTTTATGACGTGGAAGTGGGGTCAAGTTGAGGAAGAGTTTTTGGattgtgccacgtgtccaatgACCTTAGTGGACGGTGGTGATGATGGTGAGAGTGTTTATATGTGTTACGGCGGTGATTTAGTTGCGATGCGGGGTAACACGTGGCAGAGGATGGGTAAGGTTCCTGATGAGATACGTAACGTGGCGTATGTTGGAGCGTTTGATGGAGTTGTGGTTGTGATTGGATCAAGTGGCTATGGTGAAGTGCATATTGGTTATGCTTTTGATGTGAAAAAGAGTAATAATAATTGGAGAAAATTGGATTGTCCAGATGGGTTTAAGGGTCATGTCCAAACTGGTTGTGTTTTAGAAAtttag 1083 0.446 MELISGLPEDVARDCLIRVSYQQFPTVAAVCKGWKTEIHTPEFHRQRRRTGQSQKILVMVQAKVEPEKTETGSTKRLTNPVYMLSVFEPETGFWSELPAPPGYGSGLPLMCQLACVGYDLVVLGGLDPYTWKASNSVFVYNFLSAKWRRGTHMPGGPRTFFACSSDNYRTIFVAGGHDDEKNALRSALAYDVVEDKWTELPNMSSVRDECKAVFRRGKFIVVGGYTTENQGRFERSAEAFDFMTWKWGQVEEEFLDCATCPMTLVDGGDDGESVYMCYGGDLVAMRGNTWQRMGKVPDEIRNVAYVGAFDGVVVVIGSSGYGEVHIGYAFDVKKSNNNWRKLDCPDGFKGHVQTGCVLEI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00258 360 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 360 - -
Tsu06g00258 360 SUPERFAMILY F-box domain 3 48 IPR036047 GO:0005515
Tsu06g00258 360 Pfam F-box domain 4 45 IPR001810 GO:0005515
Tsu06g00258 360 Gene3D - 11 287 IPR015915 GO:0005515
Tsu06g00258 360 Pfam Kelch motif 113 154 IPR006652 GO:0005515
Tsu06g00258 360 Pfam Kelch motif 170 204 IPR006652 GO:0005515
Tsu06g00258 360 PANTHER OS02G0208700 PROTEIN 1 360 IPR044595 GO:0080037|GO:2000762
Tsu06g00258 360 SUPERFAMILY Kelch motif 79 334 IPR015915 GO:0005515
Tsu06g00258 360 SMART kelc_smart 170 217 IPR006652 GO:0005515
Tsu06g00258 360 SMART kelc_smart 119 167 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00258 Tsu-Chr6 2156034 2157762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00258 4 220 EF-hand Containing Proteins AT4G39560 23.556 2.50e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00258 - - gmx:100796602 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00258 06 2156034 2157762 Tsu06g00258 06 2156034 2157762 ECH
Tsu02g05494 02 63269375 63271127 Tsu06g00258 06 2156034 2157762 PCT