Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00242 ATGTCTAAAACAGATAAAACACAAACCAATTGTTCCACTACTTTACTTGAGCTACTTACAGAAATGAAGAACCTATCCTACACAGACCAATCCAATTTCCAACCAAAATCACCATCAAATTTTTCCTCCGAATGCTGGTTCGACGACGCATGTATCCTAGACATGGATTACTTTGTGAAAACACTTTCTGGAATCAAAGCAAAAGGTGTTCGCGCCGATTTAATCGGTTCTATTATCACACACTATGCATCCAAATGGCTACCTGACATAGCTGATCAAAAGGGTCTAACACAATTTGAAGAATCATCATCACCTGAGAGTGTAACAGCTTCATGGATGAAGAAAAGGTTCTTTGTAGAAACCTTAGTTAATGTTCTACCACCAGAAAAAGATTCAATTCCATGTAACTTTCTTCTTAGGCTATTGAGAACTGCTAACATGGTTGGTGTTGATGGAAGTTATAGGCAAGAGCTTGAGAAGAGAATTTCATGGCAATTAGATCAAGCTTGTTTGAAAGAACTTGTTATTCCATCTTTTAGTCATACTTGTGGGACACTTTTGGATTTTGAGCTTGTTATTAGGCTTGTTAAGAGGTTTGTTAGTTTGGATAATGAAGGTGCTAAAAGTGGTGCTGCTTTGGTTAAAGTTGCTAAGTTGGTTGATTCTTATCTTGCTGAAGCTGCTGTTGATGCTAATTTGAGTTTGGATGAATTTGTTACTCTTGCTGGTGCTCTTCCAAGTCATGCTAGAGCTACTGATGATGGTTTGTATAGAGCCATTGATACTTATCTAAAGGCACATCCAAGTGTATCAAAGCAAGAAAGAAAAGGTTTATGCAGACTAATAGATTGCAGGAAACTAACACAAGAGGCATCACTTCATGCAGCACAAAACGAACGATTCCCGGTAAGAGCAGTAATTCAAGTCCTTCTATCAGAACAAACAAAGCTCAACAGACACAACAACAATCATAACATGGATTGGAGTGGATCCATAATGAGCATAACAAGAAGTCCAACAAATGGATTTGGACTCGAAGCAGTTCCAACGGCAAGAtgtttatcaaagcgcgaaatGAATGCTCAACAGATTGAGATAAAGAAATTGAGGGAAGATGTTCATAGGTTGCAGAGTCAGTGTAATGCAATGCAAGTTCAGATGGAGAGAAtggttgaaaagaagaaagggTTTTTTAAGTGGAGTAAGAGATTTGGTGTGCATGGTTTTGGTAAAGGAGATTGTGCTGTTGAGAGAAGAGGTGAAGGTGTTGATAGTGATGCTCAGATTGAGTTTGGTAGACAAACACCAGCTGCTACTTCAGATATGAAAACTAGGTTGGTGAATGTTAAAGGTAGGACTCCTAATAGGTGGAGGAAATCCATGtcttga 1389 0.3737 MSKTDKTQTNCSTTLLELLTEMKNLSYTDQSNFQPKSPSNFSSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDIADQKGLTQFEESSSPESVTASWMKKRFFVETLVNVLPPEKDSIPCNFLLRLLRTANMVGVDGSYRQELEKRISWQLDQACLKELVIPSFSHTCGTLLDFELVIRLVKRFVSLDNEGAKSGAALVKVAKLVDSYLAEAAVDANLSLDEFVTLAGALPSHARATDDGLYRAIDTYLKAHPSVSKQERKGLCRLIDCRKLTQEASLHAAQNERFPVRAVIQVLLSEQTKLNRHNNNHNMDWSGSIMSITRSPTNGFGLEAVPTARCLSKREMNAQQIEIKKLREDVHRLQSQCNAMQVQMERMVEKKKGFFKWSKRFGVHGFGKGDCAVERRGEGVDSDAQIEFGRQTPAATSDMKTRLVNVKGRTPNRWRKSMS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00242 462 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 462 - -
Tsu06g00242 462 Coils Coil 359 393 - -
Tsu06g00242 462 PANTHER OS12G0117600 PROTEIN 1 462 IPR043454 -
Tsu06g00242 462 Pfam NPH3 family 45 292 IPR027356 -
Tsu06g00242 462 ProSiteProfiles NPH3 domain profile. 44 316 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00242 Tsu-Chr6 2016398 2018567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g00242 43 391 EF-hand Containing Proteins AT3G44820 33.158 3.91e-55 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00242 - - cam:101500573 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00242 06 2016398 2018567 Tsu06g00242 06 2016398 2018567 ECH
Tsu02g05510 02 63454499 63456855 Tsu06g00242 06 2016398 2018567 PCT