Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05510 ATGAAGAAACAATGTTACAAAGAACCTGAAACAAGTCCAAACCAACAAGTATCTTTGGAATATTGTTGTTGGTTTGAAGATGCATGCATCCTTGACATGGATTGCTTTGTTAAGACACTTTCAAACATCAAACAAAAAGGTGTTCGTGCCGATTTAATCGGTTCCGTCATCACTCACTATGCTTCCAAATGGCTCCCTGACCTAGAAACTTCAAATGCAAATGCTAATGCTAGTGCAAATTCACCTGAAAGTGTAACAACATCATGGATGAAGAAGAGGTTCTTTGTTGAAACCTTAGTTAGTGTTCTTCCACCAGACAAAGATTCCATTCCATGCAACTTCCTCCTTCGCCTTCTAAGAACAGCTAACATGGTTTCTGTCGATTCTACTTATCGAACCGAGCTTGAGAATCGAATTTCATGGCAGTTAGATCAAGCTTCATTGAAGGAACTCATGATACCTTCTTTTAGTCATACTTGTGGGACCCTTTTGGATGTTGAGCTTATTATTAGATTGGTTAAGAGGTTTTTGAGTTTGGATCATGATGGATCTAAAAATGGTGCTGCTTTAGTTAAGGTTGCTAAGTTGGTTGATTGTTACCTTGCTGAGGCTGGTTTGGATGCTAATTTGAGTTTGTCTCAATTTGCTGCACTTGCTGGTGCTCTTCCTAGTCATGCAAGGGCTACTGATGATGGTTTGTATAGAGCCATTGACACTTATCTTAAGgCACATCCAAGCGTGTCGAAGCAAGAAAGGAAGGGCCTGTGTAGGTTGATTGATAGCAGGAAACTCACACCAGAAGCCTCACTTCATGCAGCTCAAAACGAACGGTTGCCGGTGAGAGCTGTTATACAGGTTCTCTTCTCCGAACAAACGAAACTCAACCGCCACATTGATTGGAGTGCTTCTTTCAGTAGTATGAGGAGTCCAAGTGGATATGGTGGTGCACTCGACACACCAGCACGGTGCCATTCAAAGCGTGAAATGAACGTGCAGCAACTGGAGATAAAGAAACTGAAGGAAGATGTTTATAGACTGCAAAGCCAGTGCAATGCCATGCAAGCACAGATGGAAAAGATGGCTGAGAAGAAGAAAGGTTTCTTCAAATGGAAGAAactttcttttaataaaaacaatggTGGAGAGATGGAGAatgttgaacaagaagatgctGAAACTGAATTTGGGTTTGGAAGGCAAACACCCGTGGACATGAAAACTAGTACTGTGGCCAAAAGTAGGACTCCTCAAAAGTGGAGGAAATCTCTATCCTGA 1275 0.4063 MKKQCYKEPETSPNQQVSLEYCCWFEDACILDMDCFVKTLSNIKQKGVRADLIGSVITHYASKWLPDLETSNANANASANSPESVTTSWMKKRFFVETLVSVLPPDKDSIPCNFLLRLLRTANMVSVDSTYRTELENRISWQLDQASLKELMIPSFSHTCGTLLDVELIIRLVKRFLSLDHDGSKNGAALVKVAKLVDCYLAEAGLDANLSLSQFAALAGALPSHARATDDGLYRAIDTYLKAHPSVSKQERKGLCRLIDSRKLTPEASLHAAQNERLPVRAVIQVLFSEQTKLNRHIDWSASFSSMRSPSGYGGALDTPARCHSKREMNVQQLEIKKLKEDVYRLQSQCNAMQAQMEKMAEKKKGFFKWKKLSFNKNNGGEMENVEQEDAETEFGFGRQTPVDMKTSTVAKSRTPQKWRKSLS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05510 424 MobiDBLite consensus disorder prediction 385 424 - -
Tsu02g05510 424 Coils Coil 329 363 - -
Tsu02g05510 424 ProSiteProfiles NPH3 domain profile. 22 293 IPR027356 -
Tsu02g05510 424 PANTHER OS12G0117600 PROTEIN 20 424 IPR043454 -
Tsu02g05510 424 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 20 424 - -
Tsu02g05510 424 MobiDBLite consensus disorder prediction 402 424 - -
Tsu02g05510 424 Pfam NPH3 family 23 269 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05510 Tsu-Chr2 63454499 63456855 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05510 24 359 EF-hand Containing Proteins AT3G44820 32.353 1.38e-53 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05510 - - gmx:100777820 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05510 02 63454499 63456855 Tsu02g05510 02 63454499 63456855 ECH
Tsu02g05510 02 63454499 63456855 Tsu06g00242 06 2016398 2018567 PCT