Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu06g00235 | ATGTTGCGAAGACTCATCTCTTCACAACTCAAAACCCTAACTACTTCTTCTTCACTCCGATCTCGTTCCCCCGCCGTCTCTGTTTCTCTATTCTCCCGCCAATTCACTGCTCAATCCgATGGCGGTAGTGCAatcaaaaagaatgttgagGATGTAATGCCGATTGCTACCGGTCATGAGCGCGAGGAGATTCAGGCTGATCTCGagGGTAGGAATATTCTTGAAATCGACCACCCTGAAGGTCCTTTCGGCGTCAAGGAAGCACCTGCTGTTATCAAATCCTACTATGATAAAAGGATAGTTGGATGCCCAGGTGGTGCAGGCGAGGACGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAACCTCACGAATGTCCCGTGTGTGCACAGTATTTTGTGCTTGAAGTGGTAGGACCTGGTGGATCACCTTATGGACACGGCGACGACCATCATCACTAA | 465 | 0.4731 | MLRRLISSQLKTLTTSSSLRSRSPAVSVSLFSRQFTAQSDGGSAIKKNVEDVMPIATGHEREEIQADLEGRNILEIDHPEGPFGVKEAPAVIKSYYDKRIVGCPGGAGEDEHDVVWFWLEKDKPHECPVCAQYFVLEVVGPGGSPYGHGDDHHH | 154 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu06g00235 | 154 | Gene3D | Cytochrome c oxidase, subunit Vb | 45 | 139 | IPR036972 | GO:0005740|GO:0005751|GO:0006123 | |
| Tsu06g00235 | 154 | SUPERFAMILY | Rubredoxin-like | 44 | 142 | - | - | |
| Tsu06g00235 | 154 | CDD | Cyt_c_Oxidase_Vb | 44 | 141 | IPR002124 | GO:0005740|GO:0005751|GO:0006123 | |
| Tsu06g00235 | 154 | Pfam | Cytochrome c oxidase subunit Vb | 54 | 142 | IPR002124 | GO:0005740|GO:0005751|GO:0006123 | |
| Tsu06g00235 | 154 | ProSiteProfiles | Cytochrome c oxidase subunit Vb, zinc binding domain profile. | 44 | 143 | IPR002124 | GO:0005740|GO:0005751|GO:0006123 | |
| Tsu06g00235 | 154 | PANTHER | CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL | 1 | 154 | IPR002124 | GO:0005740|GO:0005751|GO:0006123 | |
| Tsu06g00235 | 154 | PANTHER | CYTOCHROME C OXIDASE SUBUNIT 5B | 1 | 154 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu06g00235 | Tsu-Chr6 | 1926520 | 1931733 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu06g00235 | K02265 | - | gmx:100780886 | 243.817 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu06g00235 | 06 | 1926520 | 1931733 | Tsu02g05519 | 02 | 63518115 | 63522135 | ECH | |
| Tsu06g00235 | 06 | 1926520 | 1931733 | Tsu06g00235 | 06 | 1926520 | 1931733 | ECH | |
| Tsu02g05519 | 02 | 63518115 | 63522135 | Tsu06g00235 | 06 | 1926520 | 1931733 | PCT |