Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00223 atgaaagccATGGAAGCTTTACACATGCGGTGTGTACTTCCACTATCTATGTCCAAAAACTCTCTCTTTATACCCAAAACTACAACCCCATTATCTGCATTACCAATTTCAAAGCCACCATTGATTTTCCccttatcatcatcatcatattctcAAACTGCTACTGTCAGAACAAGAGCTGGTTGGTTTTCAGGTCTTACAGATAATaagaagaagatgaacttgcctgATACTGTTAAAGCTGGTGACCCAGTTCTTCACGAACCTGCTCAAGAAATTGATCCTAGTGAGATAAAATCCGAGAAAGTGcaaaaaattattgatgataTGATTAGGGTCATGAGGAAAGCTCCTGGTGTTGGTTTAGCTGCTCCACAAATTGGAATTCCTTCTAGGATAATTGTTTTGGAAGATACCAAAGAATATATTAGTTATGCTCCAAAGGAAGAGATCAAAGCTCAAGATAGACGACCTTTTGATCTTTTGGTGATCGTGAATCCCAAACTGAAGAATAAGAGCAACAAGACTGCCCTATTTTTTGAAGGGTGTTTGAGTGTTGATGGATTTAGAGCTGTGGTGGAGCGATACCTTGACGTTGAAGTTACAGGTTTGGATCGTAATGGTGTACCAATCAAAATAACTGCTTCTGGTTGGCAAGCCCGGATCTTACAACATGAATGTGATCACTTGGAAGGAACTCTATATGTTGATAAGATGGCAGCTAGAACTTTCAGAACCGTAGACAACTTGGACCTGCCTCTTGCCCAAGGATGCCCCAAACTTGGCCCTCGATAA 795 0.3748 MKAMEALHMRCVLPLSMSKNSLFIPKTTTPLSALPISKPPLIFPLSSSSYSQTATVRTRAGWFSGLTDNKKKMNLPDTVKAGDPVLHEPAQEIDPSEIKSEKVQKIIDDMIRVMRKAPGVGLAAPQIGIPSRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIVNPKLKNKSNKTALFFEGCLSVDGFRAVVERYLDVEVTGLDRNGVPIKITASGWQARILQHECDHLEGTLYVDKMAARTFRTVDNLDLPLAQGCPKLGPR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00223 264 Pfam Polypeptide deformylase 79 241 IPR023635 GO:0042586
Tsu06g00223 264 Gene3D Peptide deformylase 73 263 IPR036821 -
Tsu06g00223 264 Hamap Peptide deformylase [def]. 74 247 IPR023635 GO:0042586
Tsu06g00223 264 PRINTS Peptide deformylase signature 108 137 IPR023635 GO:0042586
Tsu06g00223 264 PRINTS Peptide deformylase signature 181 192 IPR023635 GO:0042586
Tsu06g00223 264 PRINTS Peptide deformylase signature 193 211 IPR023635 GO:0042586
Tsu06g00223 264 PRINTS Peptide deformylase signature 212 241 IPR023635 GO:0042586
Tsu06g00223 264 CDD Pep_deformylase 79 235 IPR023635 GO:0042586
Tsu06g00223 264 SUPERFAMILY Peptide deformylase 70 246 IPR036821 -
Tsu06g00223 264 PANTHER PEPTIDE DEFORMYLASE 43 264 - -
Tsu06g00223 264 PANTHER PEPTIDE DEFORMYLASE 43 264 IPR023635 GO:0042586
Tsu06g00223 264 TIGRFAM pept_deformyl: peptide deformylase 79 240 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00223 Tsu-Chr6 1836329 1840454 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00223 K01462 - gmx:100784292 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00223 06 1836329 1840454 Tsu06g00223 06 1836329 1840454 ECH
Tsu02g05539 02 63731297 63733636 Tsu06g00223 06 1836329 1840454 PCT