Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05539 ATGGCATTGGCAGCGGCGCGGCGGCTGCTATCACGTATTCGTGTGATTCCGTTGCCGGCAGCTGTTGGCGCGGCGGGTGGTGTAGGTTTGGCTGGTGGCGCATATGCATGTAATTGTAGCTCTAACAGCAAAATTCCAGCATTGAATACCAAACATTTGAGTTTCAgctcaacatcatcatcatcatcactatgTTGGAAATTGCCCTCCATTGTAAAAGCCGGAGACCCAGTTCTTCATCAACCTGCACTTAACATTAATCCAACTGAGATTAAATCAGAAAAGATTCAGAAGATAATCGATGACATGATTCTTGTTATGAGAAAATCCCCTGGAGTTGGTCTCGCTGCTCCACAAATTGGAATCCCCTTTAGGATAATTGTTTTGGAGGATAAAGAAGAATATATTAGTTACAGTCCAGAAGAGGAGACCAAAGCACAAGACAGAAGACCTTTTGATCTTTTGGTGATTCTGAACCCCAAGCTAAAGAACAAGAGCAACAGGACTGCCTTCTTTTTTGAAGGGTGCTTAAGCGTTGATCGATTTCAAGCTGTGGTAGAGCGGTACCTTGATGTCGAGGTGTCAGGTTTTGATCGAAATGGTGAGCCAATCAAGATAAATGCTTCTGGTTGGCAGGCTCGGATTTTACAGCACGAGTGTGATCACCTAGATGGAACACTATATGTTGATAAGATGGTACCTAAAACTTTCAGATATTGGAGAAACATGGATATGCCACTTGCCCATGGTTGCCCCAAACTTGGCCCCCGGGCTTAA 777 0.4299 MALAAARRLLSRIRVIPLPAAVGAAGGVGLAGGAYACNCSSNSKIPALNTKHLSFSSTSSSSSLCWKLPSIVKAGDPVLHQPALNINPTEIKSEKIQKIIDDMILVMRKSPGVGLAAPQIGIPFRIIVLEDKEEYISYSPEEETKAQDRRPFDLLVILNPKLKNKSNRTAFFFEGCLSVDRFQAVVERYLDVEVSGFDRNGEPIKINASGWQARILQHECDHLDGTLYVDKMVPKTFRYWRNMDMPLAHGCPKLGPRA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05539 258 Pfam Polypeptide deformylase 70 235 IPR023635 GO:0042586
Tsu02g05539 258 PANTHER PEPTIDE DEFORMYLASE 61 257 - -
Tsu02g05539 258 Hamap Peptide deformylase [def]. 67 243 IPR023635 GO:0042586
Tsu02g05539 258 Gene3D Peptide deformylase 67 257 IPR036821 -
Tsu02g05539 258 PANTHER PEPTIDE DEFORMYLASE 61 257 IPR023635 GO:0042586
Tsu02g05539 258 SUPERFAMILY Peptide deformylase 70 242 IPR036821 -
Tsu02g05539 258 TIGRFAM pept_deformyl: peptide deformylase 71 234 IPR023635 GO:0042586
Tsu02g05539 258 CDD Pep_deformylase 71 228 IPR023635 GO:0042586
Tsu02g05539 258 PRINTS Peptide deformylase signature 101 130 IPR023635 GO:0042586
Tsu02g05539 258 PRINTS Peptide deformylase signature 174 185 IPR023635 GO:0042586
Tsu02g05539 258 PRINTS Peptide deformylase signature 186 204 IPR023635 GO:0042586
Tsu02g05539 258 PRINTS Peptide deformylase signature 205 234 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05539 Tsu-Chr2 63731297 63733636 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05539 K01462 - zju:107408292 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05539 02 63731297 63733636 Tsu02g05539 02 63731297 63733636 ECH
Tsu02g05539 02 63731297 63733636 Tsu06g00223 06 1836329 1840454 PCT