Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00220 ATGGAAGCAATCACCGAAGGAGTTAACAACATCAACATCTCTGATTCTATTAAGAAGAATCGCATTCAAGTCTCCAACACCAAAAAACCCCTCTTCTTTTACGTTAATCTCGCTAAGagGTATATGCAACAGCATAATGAGGTTGAGCTTTCAGCACTTGGAATGGCTATTGCCACTGTGGTTACTGTTgctgaaattttgaaaaacaatgggCTTGCTGTTGAAAAGAAAATCATGACATCAACAGTTGACATAAAAGATGATTCCAGAGGTAGACCTGTTCAAAAGGCCAAGattGAAATATTACTTGGGAAGACTGCAAACTTTGACGAGTTAATGGCTGCTGCTGCGGCAGCTGCtgaaaatggtgaaaatggaGATGTTGAAGAGCACACTGCATGA 402 0.3657 MEAITEGVNNINISDSIKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLGKTANFDELMAAAAAAAENGENGDVEEHTA 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00220 133 Gene3D - 18 128 IPR036882 GO:0003676
Tsu06g00220 133 PANTHER DNA/RNA-BINDING PROTEIN ALBA 3 1 125 IPR014560 -
Tsu06g00220 133 Pfam Alba 20 75 IPR002775 GO:0003676
Tsu06g00220 133 PANTHER - 1 125 - -
Tsu06g00220 133 PIRSF UCP030333_Alba 1 133 IPR014560 -
Tsu06g00220 133 SUPERFAMILY AlbA-like 19 114 IPR036882 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00220 Tsu-Chr6 1817117 1819777 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00220 - - gmx:100305539 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00220 06 1817117 1819777 Tsu06g00220 06 1817117 1819777 ECH
Tsu02g05542 02 63766787 63768852 Tsu06g00220 06 1817117 1819777 PCT