Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g00188 ATGGAGTTTGAAACTTGTATTATTACCCCTATTAATAACAATGAGAAACCTGATTCAGGAACACAACCCAACAATCAGAAGAGGAAGAGGTCTATCGTGTGGGAATACTTTACGGTGGAAACTCTTGGAGCTGGATGTGCCAAGGCTTACTGTAAACAGtgcaaaaaatcattttcttataTGACTGATTCAAAAGTAGCTGGCACAAGTAATTTGAAGAAGCATATTTCTTTGGGAACCTGTCAAGCAATGGAACAAAAAAGTCAATTAAACTTGCATCCTGAAAATGGTGGTTTGCGGGATAATGCCATTCCATCAAAGAAAAGGCCAAGAGCCACCAGACCTACATATGCTGGTTATGATGTCTCATTTGATCAGGAGTGTTGCAACTATGACATTgcaaaaatgataattttacaTGATTATCCTCTTGATATTGTGAAACACCAGGGCTTCATTGCTTTTGCACAGACTCTTCGTCCCCAGTTCAATCCGTCATGTTTGAGTTCTGTTGAAGGGTACTGTGTTTCTATGTATCACAAAGAGAAGCAATATCTGTTAGATCTTATTAATGGGATTCCTGGACGACTCAACCTGACATTGGACTTGTGGACTTCAAACCAGGGAACAGGGTATGTTTTTATTCGAGGACACTTCATTGATGGTGATGGCAACATACATCATCCTATTCTCAATGTTATTACAGTACTGTCTCCTGATTCAGGTGATTCCCTAAATCAAACCATAAAGACCTGCATATCTGATTGGCATTTGGAGGGTCGGGTTCTTACCCTTGCATTTGATAAATCTTTAACAAGTGAGACTGTAAAGGTAAATTTACGAAGCAATCTATCTATTAATAACCCTGTGGTTCTCGAGGGTCAGTTATGTAACCAGAATTGTTATGCCCGTGTCCTCAGTCGCCTTGCAATAGATGCACTACAGGCCATGAGCAAAACTATTAGCAAAGTTCGTGAATGTGTGAAATTTGTGAAATATTCTGAATGTCATGAAGAGAAATTTATTGAGCTTAAGCAACAACTACAAGTACCTAGTTTGGTGAACCTTTTGATAGATGATCATTATAAATGGGATTCAACATTCCATATGCTTGTAGCTGCCTGTGAATTAAGGGAAGTCTTTACTTTCTTTGATGCCGCTTGTCCTGATTTCACAATGACTCTAACTGTGGATGACTGGAAGCAGATTGAGACTCTCTGCACATATTTGAAGTATTTGTATGATGCAGCTCATATGCTAACAACCCGACCATACCCAACTGCAAACTTATTTTTTCTTGAAGTGTCAAAACTTCATATGGAGTTGACTAATGCAGCCTTTAGCCAGGATCCTTTTCTTAGTAGTTTGATTTTGCCTTTGCTCAGGAACTTTGATCGATATTGGAGAGATAGCTGCCTAATCTTGGCAGTTGCTGTGGCCATGGATCCAAGGCATAAAATGAAACTTGTGGAATCCATTTTTGCTAAGATATTTGGAGAGGATGCTGTGCAATGGATAAGAATAGTTGTGGATGGACTTCATGAATTGTTCATTGAATATAACACCGAAATGCTTCATTTTACTGCAATAGATGGCGATGAGGGGGATGATATTCTGTTAAAGACACAGCCATATGAAGGACCGGTTGATGGTTCTCTTTTTGTTGATGAAGGTGGACTTTCTGACTTTGAGTTTAATATAtctgatttgaatttgaattgtatgCAGCAATTCAAGTCAGAAATGGATGAGTATTTGGAAGAACCTTTGGTGTCGGAAGTCAAAGAATTTGATATTCTGAATTGGTGGAGGGAAAATCGAACGAAGTATCCAACATTGTCTAGAACTGCATCTGATATTTTGTCTATGTCAATATCCACTGTGTCTGCAGATTCTGTTTTTGACACAGAAATTAGAAAAATGGATGACTACCGGAATTCGTTAGACTCTCGTACTCTTGAAGCTCTTATTTGTGCCAAGGATTGGTTCCAGCATAAATCTATACCCAAAAACGGTTCAAGTACACTTGAGAAAATGAAAGTTCAGACATAG 2052 0.3777 MEFETCIITPINNNEKPDSGTQPNNQKRKRSIVWEYFTVETLGAGCAKAYCKQCKKSFSYMTDSKVAGTSNLKKHISLGTCQAMEQKSQLNLHPENGGLRDNAIPSKKRPRATRPTYAGYDVSFDQECCNYDIAKMIILHDYPLDIVKHQGFIAFAQTLRPQFNPSCLSSVEGYCVSMYHKEKQYLLDLINGIPGRLNLTLDLWTSNQGTGYVFIRGHFIDGDGNIHHPILNVITVLSPDSGDSLNQTIKTCISDWHLEGRVLTLAFDKSLTSETVKVNLRSNLSINNPVVLEGQLCNQNCYARVLSRLAIDALQAMSKTISKVRECVKFVKYSECHEEKFIELKQQLQVPSLVNLLIDDHYKWDSTFHMLVAACELREVFTFFDAACPDFTMTLTVDDWKQIETLCTYLKYLYDAAHMLTTRPYPTANLFFLEVSKLHMELTNAAFSQDPFLSSLILPLLRNFDRYWRDSCLILAVAVAMDPRHKMKLVESIFAKIFGEDAVQWIRIVVDGLHELFIEYNTEMLHFTAIDGDEGDDILLKTQPYEGPVDGSLFVDEGGLSDFEFNISDLNLNCMQQFKSEMDEYLEEPLVSEVKEFDILNWWRENRTKYPTLSRTASDILSMSISTVSADSVFDTEIRKMDDYRNSLDSRTLEALICAKDWFQHKSIPKNGSSTLEKMKVQT 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g00188 683 Pfam hAT family C-terminal dimerisation region 581 663 IPR008906 GO:0046983
Tsu06g00188 683 PANTHER BED FINGER-RELATED 16 670 IPR045259 -
Tsu06g00188 683 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1 16 670 - -
Tsu06g00188 683 Pfam Domain of unknown function (DUF4413) 422 520 IPR025525 GO:0003677
Tsu06g00188 683 SUPERFAMILY Ribonuclease H-like 191 664 IPR012337 -
Tsu06g00188 683 MobiDBLite consensus disorder prediction 92 112 - -
Tsu06g00188 683 Pfam BED zinc finger 33 76 IPR003656 GO:0003677
Tsu06g00188 683 SMART bed5 28 84 - -
Tsu06g00188 683 SUPERFAMILY beta-beta-alpha zinc fingers 31 79 IPR036236 -
Tsu06g00188 683 ProSiteProfiles Zinc finger BED-type profile. 28 88 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g00188 Tsu-Chr6 1575325 1577376 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g00188 - - gmx:106799409 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g00188 06 1575325 1577376 Tsu06g00188 06 1575325 1577376 ECH
Tsu02g05576 02 63993072 63997115 Tsu06g00188 06 1575325 1577376 PCT