Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03961 ATGGAATCTCCACAATCTATTGTGTCAGTGTCACCATTCAAGAGCTCAGTCTTTGGAGATTCTGAGAAGTATAAGTTTGATCTTTTGACACAAAGGTCTAGTCCTTTGTCTAAGGGCATTGAAATCAATGGAAAAGAAGTTTTTGCAGTGTCGAATCAAGACGAATTCATTGGAGTAGTTGATGTTTACATACATCAAGCTAGAGACATTCATAACATCTGCATATATCATAAGCAAGATGTTTATGCTAAGATTTCTTTGACAAATGAACCTAAGAATTCCGTCTCTACCAAGATTATCAACGGCGGAGGAAGGAACCCCGTGTTTAACGATAACCTTCGTTTAAGCGTTAGGACTGTCGATTCTTCTCTCAAATGTGAGATTTGGATGCTGAGTAGGGTCAAGAATTATCTTGAAGACCAGTTGCTTGGTTTTGCTTTGGTACCTTTGTCTGATGTTTTGATGAAAGATGGAAAACTAGAGAAAGAGTTCTCTCTTTCTTCGACCGATTTGTTCCATTCCCCGGCAGGTTTCGTTCAATTGTCTCTTGCTTACAACGGTGCTTCGCCTGATGTTATGGCAATTTCGGCAATGCCTAATGCTGAATTGGATAGAAATGGCATTCAGAAGGACTCTGAAACATGTGAGTCCATCGTGAGAGAATTAGGTAAAATCGAGTTCCCGGATCCGAAAATTGTAAATGAAGATCATTTAATGGTTTCAGAATACTTTGGCACTGATAGCTTGGCCACTACTGATACTGAAAATCTTAGTTCAGAAAAAGGTGTTCAGTTTGTGGAAAGCTTCTCGGCATGTAGTGCCGAATCTGTTGAACCGCCGAAGGTTGAATCTCCACCTAGCAGTGTGTCAACAAATGGCGTCGCTTCCTCTCCTTCATTGGCTGCAAGCTCAGAATCACACGCTGCTACTAAATCTCCCATTCAGGAGCAAATTTCAGGCATAAAAGAGAAAACTGTTGATGTCAAAGATGGCGAGAGTGATTCATCGAACGCGTTGCTGAATGAGTCATTTCAAAAGCCTCTTGTGAGTGTGAATATTGAGCCAGAGCCAAAGATGGTGCAGCAAGATATAGTAGACATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTAGCAAAAATGAAGCTTCCTATGGACTTTGAAAATGGACCAACTAGTTCAGGAAACTCAATCTCTGAACCGAAACTACAGTCGTCGAAGAGTAGTAACTCGCGCGTGTTTTATGGTAGTAGAGCTTTCTTCTGA 1269 0.4082 MESPQSIVSVSPFKSSVFGDSEKYKFDLLTQRSSPLSKGIEINGKEVFAVSNQDEFIGVVDVYIHQARDIHNICIYHKQDVYAKISLTNEPKNSVSTKIINGGGRNPVFNDNLRLSVRTVDSSLKCEIWMLSRVKNYLEDQLLGFALVPLSDVLMKDGKLEKEFSLSSTDLFHSPAGFVQLSLAYNGASPDVMAISAMPNAELDRNGIQKDSETCESIVRELGKIEFPDPKIVNEDHLMVSEYFGTDSLATTDTENLSSEKGVQFVESFSACSAESVEPPKVESPPSSVSTNGVASSPSLAASSESHAATKSPIQEQISGIKEKTVDVKDGESDSSNALLNESFQKPLVSVNIEPEPKMVQQDIVDMYMKSMQQFTESLAKMKLPMDFENGPTSSGNSISEPKLQSSKSSNSRVFYGSRAFF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03961 422 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 55 187 IPR035892 -
Tsu05g03961 422 ProSiteProfiles C2 domain profile. 41 164 IPR000008 -
Tsu05g03961 422 PANTHER EXPRESSED PROTEIN 1 422 - -
Tsu05g03961 422 MobiDBLite consensus disorder prediction 275 340 - -
Tsu05g03961 422 MobiDBLite consensus disorder prediction 390 411 - -
Tsu05g03961 422 Pfam C2 domain 59 164 IPR000008 -
Tsu05g03961 422 SMART C2_3c 59 162 IPR000008 -
Tsu05g03961 422 Gene3D C2 domain 53 205 IPR035892 -
Tsu05g03961 422 MobiDBLite consensus disorder prediction 283 319 - -
Tsu05g03961 422 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 422 - -
Tsu05g03961 422 MobiDBLite consensus disorder prediction 386 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03961 Tsu-Chr5 50581019 50583904 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03961 - - gmx:100781587 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03961 05 50581019 50583904 Tsu05g03961 05 50581019 50583904 ECH
Tsu03g01136 03 10709314 10711354 Tsu05g03961 05 50581019 50583904 PCT