Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03912 ATGGCTCCGATGGAAGAAAATGTTGTTGCCTCCAAGCTTGAGAAGTTGTTTAGCATGAAAGGAGGCAAAGGAGAGGCCAGCTATGCCAACAATTCCCAAGCACAGGCCATACATGCCAAGTCTATGATGCACTTTTTGAGAGAAACCCTAGATAATGTTAAGCTAGTTGGTGGTGATGACAAGGCTTTTGTGATTGCTGATTTGGGATGTTCATGTGGAAGCAACACTATTAATGTGGTTAATGTGATAATTAATCACATCATTAAGCGCTATGAAGCTTTAGGTTGCAACCCACCTGAATTTTCAGCCTTTTTTTGTGACCTTCCTAGCAATGACTTTAACTCTCTCTTTCAACTCCTTCCACCAATTGCAACCTATGGTGTTAGCATGGAAGAATGTTTAGCTATTGACAACCAAAGGTCCTACTTTGCCGCCGGTGTTCCCGGTTCGTTTTATCGGAGACTTTTTCCGACTAAGTCCATTGATGTTTTTCACTCTGCCTTCTCTTTGCATTGGTTATCTAAGATACCCGAATCAGTGTTGGACAAGAGGTCAATTGCATACAACAAAGGGAAGGTGTTTATCCATGGTGCCAATGAAGCAACAGCCAATGCCTACAAGAGACAATTCAAAGCAGATTTAGCAGGCTTCTTGAGTGCAAGGTCAGTGGAAATGAAGAGAGAGGGGTCCATGTTCTTAGTTTGTTTGGGAAGAACTTCAGTGGACCCCACTGAACAAGGTGGGGCTGGTGTCCTTTTTGGGACCCATTTTCAGGATGCTTGGGATGACCTTGTCCTTGAGGGATTAATTAGCTCCACAAAAAGAGACAATTTCAACATTCCAGTTTATGCACCAAGTTTGCAAGACTTCAAGGAAGTAGTTGAAGAAAATGGTTCATTTGTGATAAACAAGCTTGAGGTATTCAAAGGAGGAAGTCCCCTTGTTTTGAACAAACCAGATGATGCTGATGAAGTAGGAAGGGCTCTAGCCAATAGCTGCAGGACTGTATGTGGAGTCCTTGTTGATGCTCACATTGGTGATAAACTAAGTGAGGAACTCTTCCTTAGAGTGGAGCGCCGAGCTGCTAATCGTGCCAAGGAGCTTTTGGAGAAACTACAGTTCTTTCACATTGTTGCATCTCTTTCTTTTGCTCAATGA 1158 0.4292 MAPMEENVVASKLEKLFSMKGGKGEASYANNSQAQAIHAKSMMHFLRETLDNVKLVGGDDKAFVIADLGCSCGSNTINVVNVIINHIIKRYEALGCNPPEFSAFFCDLPSNDFNSLFQLLPPIATYGVSMEECLAIDNQRSYFAAGVPGSFYRRLFPTKSIDVFHSAFSLHWLSKIPESVLDKRSIAYNKGKVFIHGANEATANAYKRQFKADLAGFLSARSVEMKREGSMFLVCLGRTSVDPTEQGGAGVLFGTHFQDAWDDLVLEGLISSTKRDNFNIPVYAPSLQDFKEVVEENGSFVINKLEVFKGGSPLVLNKPDDADEVGRALANSCRTVCGVLVDAHIGDKLSEELFLRVERRAANRAKELLEKLQFFHIVASLSFAQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03912 385 Gene3D Vaccinia Virus protein VP39 31 311 IPR029063 -
Tsu05g03912 385 Pfam SAM dependent carboxyl methyltransferase 60 381 IPR005299 GO:0008168
Tsu05g03912 385 PANTHER INDOLE-3-ACETATE O-METHYLTRANSFERASE 1 8 383 - -
Tsu05g03912 385 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 8 383 IPR005299 GO:0008168
Tsu05g03912 385 Gene3D - 17 366 IPR042086 -
Tsu05g03912 385 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 382 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03912 Tsu-Chr5 50132734 50137062 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03912 K18848 - gmx:100807953 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03912 05 50132734 50137062 Tsu05g03912 05 50132734 50137062 ECH
Tsu03g01186 03 11121053 11125133 Tsu05g03912 05 50132734 50137062 PCT