Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03875 ATGCTCTTTTTGATCCAGATATTCGCAGAGGGAGATTTCCTTAGAAGGAAGATCGATTCCAATCCAGAGGAAAATGATATAACATCTTTGCCAAGAGATATTCATGGTGCTCCTCCTGAAAGTCTTGTTGTAAAGTTGGCCGAGATTGTTGGAAACTACAAGGCCCTCAGAAAAATGGCTCTGTTCTGGTGCAGCGTTGTTACTGAACTGAGAAAATTTTGGTATGAAGAACGTTATTTACCTGGAGTCCCTCAGAATGAGATTCCAGACCTGAAAACATGTCTTTTGAATCAACactttcaagtaattaattgtTGTATTTCTCGGAAGAGCCTCCGTATCATTGCGACTGAATCTCTAGACTCTATGGTGATGCAAGCTAGTTCGAGCATTAAAGAATCAGCCAATGATGATAATGGAGCTCCTGCAAGCCCTGTTTTATATGCCAGATTAAATACCGGAGAGCGTGTTCTTCGACTTGGTGCGAATTGCCCCTCTGGTGATTTGACTTTGTTGGAAACTGGCGAGCCTGTGTACTCTCCTGTCACACAGGAAGGACCTTTGCTTACAGAAGATTTAATCAGAGAAACAGAGGAGTTTGTGCTGCGGACTGGGAGTGTTGGCGCTGGCTGCTCGCAACTGCTCTCGGATATGCAGGCTTTCAAGGCTGCAAATCCTGGATGTATTTTGGAGGATTTTGTAAGATGGCACTCACCTCCTGATTGGACAGACAATGAGGCTTGTATTGAGGACAGTGATGTTTTTGACAGTGGCGAGTCATTGTCGGCCAGAGGCCAACTAAGTCGACGTATGCAAAAAGAAGGTAATTTGTGGCGTGAATTGTGGGAAACATCTAAACCAGTACCAGCTGTAAAGCAGGCACCTCTCTTCGATGAGGATTTGGCAGTAGAGGGCATCCTCAATACATTTGAGGACATCCATCCTTTCGAGCTTTTTGGGCAGTTGTTTGTCTCTTTACTTGGGTTAGGATTTGCGATTGCTGAACCTCTGCTGTCTAGTAACAAGGACTTCTCAAAGTTGTTCTATGACTGCAAGGAGTACATAGTTACTACATGCCAAAGCACCAAATGGAGTGAGAAAGTTGATGACCTTGTCCAGGTATACGAAACAGTGGAGACAATGTTAATGAATCCTGAAGAAGCATTGAAGATGGTGAAACAAACAGAAGAATCAACGACGGTTACTGATGAACCAATGAGCCGGTTGAAGAGGCTTAGCCTTATCTTCAGCGGCaaagataaaatattgaaaaagacTTTGTCAAAAGATCAACTAAACGATGAAGACAGGTCGACACCACGACAATCTTTCTCAAGTTTCTTTGAAAACAAGTcatctttattttcaaagaagcCTCCTAGGTCTGGATCCCCGTCCCAGTCTCCTTCAGAGAAACCTCCTAGGTCTGGATCCCCATCCCAGTCTCCTTTAGAGAAACCTCCTATCGAAACCGAATGGACAATTGTTTAA 1491 0.4252 MLFLIQIFAEGDFLRRKIDSNPEENDITSLPRDIHGAPPESLVVKLAEIVGNYKALRKMALFWCSVVTELRKFWYEERYLPGVPQNEIPDLKTCLLNQHFQVINCCISRKSLRIIATESLDSMVMQASSSIKESANDDNGAPASPVLYARLNTGERVLRLGANCPSGDLTLLETGEPVYSPVTQEGPLLTEDLIRETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTDNEACIEDSDVFDSGESLSARGQLSRRMQKEGNLWRELWETSKPVPAVKQAPLFDEDLAVEGILNTFEDIHPFELFGQLFVSLLGLGFAIAEPLLSSNKDFSKLFYDCKEYIVTTCQSTKWSEKVDDLVQVYETVETMLMNPEEALKMVKQTEESTTVTDEPMSRLKRLSLIFSGKDKILKKTLSKDQLNDEDRSTPRQSFSSFFENKSSLFSKKPPRSGSPSQSPSEKPPRSGSPSQSPLEKPPIETEWTIV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03875 496 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 9 464 - -
Tsu05g03875 496 MobiDBLite consensus disorder prediction 430 496 - -
Tsu05g03875 496 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 9 464 IPR045700 GO:0005096|GO:0043547
Tsu05g03875 496 MobiDBLite consensus disorder prediction 438 487 - -
Tsu05g03875 496 Pfam Rab3 GTPase-activating protein catalytic subunit 158 311 IPR026147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03875 Tsu-Chr5 49812606 49818001 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03875 K18270 - gmx:100818643 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03875 05 49812606 49818001 Tsu05g03875 05 49812606 49818001 ECH
Tsu03g01272 03 12181266 12186673 Tsu05g03875 05 49812606 49818001 PCT