Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03872 atgGGTCAGATCgtgagaaggaagaagaaaggaAGACCTTCTAAAGCAGATCTAGCTCGCCGTTCCGGTCAATCTCCGACAACCACTTCTCAAAACGATCTACGACGGAGCCGTCGACGGAGAAATGTGAGGTATAATATCATAGACTATGATGATTACCtcgatgaagaagatgaagatgaagaacaagaagatgatgaagatgaaagaagacgtgagaagaagaagttgaagcTTGTTGAGAAGCTCAATCAAGGTgtggatgaagatgaagaagaacaagatgaagttgatgatgatgaaaagcATAGTCGCGGTAGGTCGCGTGTTAAACACGCGCCTGTTTctgataaaagaaaaattggtagaaaaaatgaagatagggttgatgaagatgaagaaaatgaaaatgaagaagaagaaagagaagaggaagaagaagtagTAGTAGAAGAAGAAAGGATTGAAAATGCAGAGGaacatgatgatgaagaagaagaagaacGTACCCCTTTGAAGGTTCAATCCGAAATTCCGTTGCCTGATAAAAGGACCCTTGAATTGATCCTTGACAAGCTTCAGAAGAAGGATACATATGGTGTTTATGCAGAGCCAGTTGATCCGGAAGAGCTTCCTGATTATCACGATGTCATTGATAATCCCATGGACTTTGCCACCGTGAGGAAGAAATTGGCAAATGGATCTTATACTACATTAGAACAATTTGAGAGTGATGTATTTTTGATTTGCTCAAATGCAATGCAATACAATTCGTCAGATACTATATACCACAAACAGGCACGTTCAATACAAGAACTGGCTAGAAAGAAGTTTGAGAAGTTAAGGATCAACTTAGAACGCTCTCAGAGTGAGATGAAATctgaacaaaaaacaaaatccaatTCCTTAGGTAAGAAGCCAGCAAAAAGGCCACTTGGTTATGCTTCGCAGGAACCTGTTGGCTCTGATTTCTGCTCTGGTGCAACTCTTGCTACTACTGGAGATGTACTGCCAATTTCCCATCCAATTCAAGGTATCTTCTGTGAAAGGCCTGGCAACATGGATGTCCCTGTGGAGGGGAGTGCATTCTTTTTCGACGTAAATCAAGAGAAAGCAGAAGAATTTATTTCAGGGAAAAGCCTTCCCTCCAAGATGGGAAGGAAATCATCTGTGCAAGATTATGAACGCCGCGCTACTTATAATATGGCTAATCTACCAGTTACTAGATCTGATTCAATATTTACGACGTTTGAGAGTGAAATTAAGCAGTTAGTTACTGTTGGACTTCAAGCTGAATATTCCTATGCCAGGAGTTTGGCTCGTTTTGCTGCAACTCTAGGACCTACTGCTTGGAGAATAGCTTCCCAGAAGATTCAACAGGCACTGCCATCTGGCTGTAAATTTGGTCGTGGTTGGGTTGGGGAGTATGAACCACTTCCAACCCCAGTATTAATGCTTGATAACCGTGTCCCGAAACAACCTAGTCTGGCAACAAAGTTGCAGTCTACTACTAAATTACCAAACCTCAGCAAAAATGGTAAGAATGTAGAATCCACCTTGGAGCATCCTGTAAATGAACCGATGTTTGAGGGTAGACAGCCTTCAGTACGCCCTGGTTGTGGACTTGCATCAGAAGGAAAACAATCATTGTTTGGTTCTACTGGAGTAAGACCGAACGCTCCTATCAATCTCACTCGTCAGCAATCAAATGTCCAAACCAGGAATGTTGGCAAGTCTCAGAATAAGGGTTTGCAACAAGTGGAGTTGAACTCTTTACCCTCAAGCGATCAGAACAATGCCAGTCTAGTTGCAAAGCTTACAAGTAATGCTCCTGCAGCTGTTTCTAAACCTAGAGAGATGGTACCAAGTAACATGAACATTTTAACATCTATGCCTTTCAAGCAGCCAGATGCTAATGTAGTTGTTAGTGGAGAGTTACCAAATGGAAAAATCAGGAATTCTAGTTTCAATAGACGGATGACTGGTCCATCATCTGAAAGTACATCAACTCAGACGGGCAGATCAGCTCCCTTTATTACCCATGGGCAAGAGCAGAGTCTTAGCGACCCAGTTCAGATGATGAGAATGTTAGCCGAGAAGGCTCAAAAGCAGCAGGCTTCTAGTTCATCTAATCATTCCCCTGTCGAAACTCCACCAGCGACTCCATCAGTTCCACCTGGACGGAGAGAAGATTTGAGCAATGCCTCGGCAGCAGCTGCTCGTGCATGGATGTCTGTAGGAGCTGCAGGGTTTAAACAAGGACCTGAAAATTCTAGCTCACCCAAAAGTCAGATTTCTGCTGAGTCATTGTACAACCCAACCCGAGAGTTCCAGCAGCATCTTTCACGAATTAGGGGTGAGTTTCCTCCTGGTGGAATGCCTTTCCAGTCAGAGAAGAACAATTTTCCATTTCAGGCACTTGTATCTCAACACATGCACGCAGTTGGTGTTTCACAATTTCCAAACCGACCTATGGTTTTCCCTCAACAAGTCGCAGCTTCCGACCTATCAAGATTTCAAATGCAGCCCCCTTGGCAAGCTGTTCGGCCTCATAGTCAACCAAGACAGAAACAAGAAACATTTCCTCCTGATTTGAATATTGATTTCCAATCACCTGGGTCCCCTGCAAAACAATCTTCTGGTGTACATGTTGACTCACAGCAACCAGACCTGGCTTTGCAGCTATGA 2688 0.3925 MGQIVRRKKKGRPSKADLARRSGQSPTTTSQNDLRRSRRRRNVRYNIIDYDDYLDEEDEDEEQEDDEDERRREKKKLKLVEKLNQGVDEDEEEQDEVDDDEKHSRGRSRVKHAPVSDKRKIGRKNEDRVDEDEENENEEEEREEEEEVVVEEERIENAEEHDDEEEEERTPLKVQSEIPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDNPMDFATVRKKLANGSYTTLEQFESDVFLICSNAMQYNSSDTIYHKQARSIQELARKKFEKLRINLERSQSEMKSEQKTKSNSLGKKPAKRPLGYASQEPVGSDFCSGATLATTGDVLPISHPIQGIFCERPGNMDVPVEGSAFFFDVNQEKAEEFISGKSLPSKMGRKSSVQDYERRATYNMANLPVTRSDSIFTTFESEIKQLVTVGLQAEYSYARSLARFAATLGPTAWRIASQKIQQALPSGCKFGRGWVGEYEPLPTPVLMLDNRVPKQPSLATKLQSTTKLPNLSKNGKNVESTLEHPVNEPMFEGRQPSVRPGCGLASEGKQSLFGSTGVRPNAPINLTRQQSNVQTRNVGKSQNKGLQQVELNSLPSSDQNNASLVAKLTSNAPAAVSKPREMVPSNMNILTSMPFKQPDANVVVSGELPNGKIRNSSFNRRMTGPSSESTSTQTGRSAPFITHGQEQSLSDPVQMMRMLAEKAQKQQASSSSNHSPVETPPATPSVPPGRREDLSNASAAAARAWMSVGAAGFKQGPENSSSPKSQISAESLYNPTREFQQHLSRIRGEFPPGGMPFQSEKNNFPFQALVSQHMHAVGVSQFPNRPMVFPQQVAASDLSRFQMQPPWQAVRPHSQPRQKQETFPPDLNIDFQSPGSPAKQSSGVHVDSQQPDLALQL 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03872 895 Coils Coil 80 100 - -
Tsu05g03872 895 CDD Bromodomain 182 278 - -
Tsu05g03872 895 SMART bromo_6 175 283 IPR001487 GO:0005515
Tsu05g03872 895 Pfam Bromodomain 188 268 IPR001487 GO:0005515
Tsu05g03872 895 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 895 - -
Tsu05g03872 895 MobiDBLite consensus disorder prediction 646 685 - -
Tsu05g03872 895 MobiDBLite consensus disorder prediction 701 717 - -
Tsu05g03872 895 MobiDBLite consensus disorder prediction 845 895 - -
Tsu05g03872 895 ProSitePatterns Bromodomain signature. 200 256 IPR018359 -
Tsu05g03872 895 MobiDBLite consensus disorder prediction 285 319 - -
Tsu05g03872 895 MobiDBLite consensus disorder prediction 131 166 - -
Tsu05g03872 895 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 895 - -
Tsu05g03872 895 MobiDBLite consensus disorder prediction 698 738 - -
Tsu05g03872 895 MobiDBLite consensus disorder prediction 1 15 - -
Tsu05g03872 895 PRINTS Bromodomain signature 227 245 IPR001487 GO:0005515
Tsu05g03872 895 PRINTS Bromodomain signature 245 264 IPR001487 GO:0005515
Tsu05g03872 895 PRINTS Bromodomain signature 211 227 IPR001487 GO:0005515
Tsu05g03872 895 MobiDBLite consensus disorder prediction 51 67 - -
Tsu05g03872 895 ProSiteProfiles Bromodomain profile. 194 264 IPR001487 GO:0005515
Tsu05g03872 895 MobiDBLite consensus disorder prediction 1 173 - -
Tsu05g03872 895 Gene3D - 181 303 IPR036427 GO:0005515
Tsu05g03872 895 MobiDBLite consensus disorder prediction 285 302 - -
Tsu05g03872 895 SUPERFAMILY Bromodomain 174 281 IPR036427 GO:0005515
Tsu05g03872 895 Coils Coil 271 298 - -
Tsu05g03872 895 MobiDBLite consensus disorder prediction 68 85 - -
Tsu05g03872 895 Coils Coil 121 168 - -
Tsu05g03872 895 MobiDBLite consensus disorder prediction 648 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03872 Tsu-Chr5 49753871 49759569 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03872 K22184 - gmx:100799986 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03872 05 49753871 49759569 Tsu05g03872 05 49753871 49759569 ECH
Tsu03g01281 03 12236980 12242240 Tsu05g03872 05 49753871 49759569 PCT