Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01281 ATGGTTCAGATCGCAAAGAGGAAGAAAGGAAGGCCGTCGAAGGCGGATCTAGCTCGCCGTTCCGCCGAATCTCAAGCCGCCGCAACGGAATCCGATTCCCGGCGAAGTCTCCGCCGCAAAAACGTAAGGTACAATATAATTGATTACGACGGTGATTACAtcgatgatgaagaagatgagaggAGACGCGAGAAGAAGAAGCTGAAATTGATGGCGAAGCTACAGCAGGGTGAAGTGGAAGAAGAGCAGGAATTGGAAGATCATGCAAcaatggaggaagaagaagagtgtGATGAAATTGAAGGTGGTGAAGAGAATGAAGATGGTGAAGAAAAGCATGAAGAAGAAAGTGTGATAAAGAGCACAAAAGTAGAATCAAAAGGGCTCCACTTTGTTTCTGTTTCAGGAACTCCAGCCAATTATCAATATGGGATTCCATTGCCTGATAGGAAGATTTTGGAAGTGATCCTTGACAAGCTACAGAAGAAGGACACGTATGGTGTGTTTGCAGAGCCGGTTGATCCGGAAGAGCTTCCTGATTATCACGATGTGATTGAGCATCCCATGGATTTCGCCACAGTCAGGAAAAAGTTGGCAAATGGAGCTTATCCTACCTTAGAACAATTTGAGagtgatatatttttaatttgctcAAACGCAATGCAATACAATTCACCAGAGACTGTATACCACAGACAGGCACGAACTATACAAGAACTTGGGCGGAAGAAGTTTGAGAAGTTAAGGATTAAATTTGAACGTACTCAGGTTGAGCTAAAATCAGAACAGAAAACACAGCCCAATTCTTTGGTTAAGAAGCCATTGAAAAAGCTACCAGGTTGTGCCTCACAAGAATCTGTTGGCTTTGATTTATCATATGGAGATGCACAGCCAACTTCCTATCCAATGCAAGGTGGTAGCTATGAGAGGCCTGGAAACATTGATGGTATTGTGGAGGGGAATTCTTTCTTGATTGATGCAAATCAAGGTAAAGCTGAAGATGTTTTGTCAGGGAAGAATATGCTCTCTAAGATGGGAAAGAAGTCATTTGTGCTTGAAGACAATCGTCGTTCATCTTATAATATGTCTAATCAACCAATCACTAGATCAGATTCAACATTTATGACCTTTGAGAGTGGAACAAGGCAGCTGGTTACTGTTGGTGTCCATGCTGAATATTCCTATACTAGGAGTTTGGCTCGTTTTAGTGCATCTCTAGGACCCATTGTTTGGAAAATTGCTTCCAACCGGATTCAACAAGCACTTCCTGCCGACTGTAAATTTGGTCGTGGCTGGGTTGGAGAGTATGAAGCACTTCCAACCCCAATACTTATGCTTGGTAATCATCTCCAGAAAGAATCGGGTTTGTTTATGAAGTTGCACAGTGACAAAAATGGTAAGGGTTTAGAAGCCAAAACTGAACATCCTGTAAATGGACAGATGCTTGAGCGAAAACATTCTTCAGATTCTCCTACCAGTTGGCCTGTATCCGAAGGAAATCCTTCTATTGGTTCTGCTGGAATGAAGCCCAATACTCCTCTCAATCTCCCCAATCAGCAGAATGCCCAATCTAGGAATTTTGGCAAATCTGAGAATAATAGTTTGAATAAAGTGGAGCTGAAATCTTTACCCTCTAGTAATCAAAATAATTCCAGTCTGGTTGCAAAGTTTGGAAGTAATACTCCTATAGCAGAATCAAAGCACAAAGAGATGGCGCCTAGGAACTTGAATGCTTTGCCAGCTACAACTTTCAAGCAGCCAGATACAAATGAAGTTGTTGGTGGACAATTACCTGATGGAAAAGTCATGAATACAAGCTTGAATAGACGGTCAACTGCTTCATCGTCTGATATTACATCAAACCAAACAATCAGAACGGGTTCTTTTGTTTTCCGTGAGCAAGAGCAGGGTCTCACTGACCCAGTTCAGTCGACGAGAATGTTGAAAGAAGAGGCTCAAAAGCCCCTGACTTCTAACCATTCACCAGTTGACACTCTGCCAGAAATGCCATCAGCTCCATCTGGACAAAGAGATGCCTCGGGAAATGCTTCAGCAGCAGCTGCTCAGGCATGGATGTCTGCAGGGGCAGGAGGTTTTAAACTAGGACCTGAGAATACTGGTTCATCCAAAAATCAGGTTTCTGCAAATTCTCTTCACAACTCAACGAGGGAGTTCCATCAGCATATTTCACGAATTCAGGGTGAGTTTCCTTCGGGCGGAATGTCGTTCCAGTCTAATAAGAACAATTTTCCATTTCATTCACCTAGACCTCAACCTATTCACACAAGTTCCGTTTCACAGTTTCCCAACCAACCTATGGTTTTCCCTCAATCAACATCAGCAGACCATCCTAGATTTCAAATGCAGTCCCCTTGGCGAGGCCTCGGTCCTCAAAGCCAACCGAGGCAGAAACAGGAAACCCTTCCGCCTGACTTGAATATTGATTGTCAATCTCCAGGGTCACCTGCAAAGCAATCCTCTGGTGCTGTTGATTCACAGCAACCAGACCTAGCTTTGCAACTATGA 2526 0.424 MVQIAKRKKGRPSKADLARRSAESQAAATESDSRRSLRRKNVRYNIIDYDGDYIDDEEDERRREKKKLKLMAKLQQGEVEEEQELEDHATMEEEEECDEIEGGEENEDGEEKHEEESVIKSTKVESKGLHFVSVSGTPANYQYGIPLPDRKILEVILDKLQKKDTYGVFAEPVDPEELPDYHDVIEHPMDFATVRKKLANGAYPTLEQFESDIFLICSNAMQYNSPETVYHRQARTIQELGRKKFEKLRIKFERTQVELKSEQKTQPNSLVKKPLKKLPGCASQESVGFDLSYGDAQPTSYPMQGGSYERPGNIDGIVEGNSFLIDANQGKAEDVLSGKNMLSKMGKKSFVLEDNRRSSYNMSNQPITRSDSTFMTFESGTRQLVTVGVHAEYSYTRSLARFSASLGPIVWKIASNRIQQALPADCKFGRGWVGEYEALPTPILMLGNHLQKESGLFMKLHSDKNGKGLEAKTEHPVNGQMLERKHSSDSPTSWPVSEGNPSIGSAGMKPNTPLNLPNQQNAQSRNFGKSENNSLNKVELKSLPSSNQNNSSLVAKFGSNTPIAESKHKEMAPRNLNALPATTFKQPDTNEVVGGQLPDGKVMNTSLNRRSTASSSDITSNQTIRTGSFVFREQEQGLTDPVQSTRMLKEEAQKPLTSNHSPVDTLPEMPSAPSGQRDASGNASAAAAQAWMSAGAGGFKLGPENTGSSKNQVSANSLHNSTREFHQHISRIQGEFPSGGMSFQSNKNNFPFHSPRPQPIHTSSVSQFPNQPMVFPQSTSADHPRFQMQSPWRGLGPQSQPRQKQETLPPDLNIDCQSPGSPAKQSSGAVDSQQPDLALQL 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01281 841 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 841 - -
Tsu03g01281 841 MobiDBLite consensus disorder prediction 704 718 - -
Tsu03g01281 841 CDD Bromodomain 149 245 - -
Tsu03g01281 841 MobiDBLite consensus disorder prediction 466 482 - -
Tsu03g01281 841 SUPERFAMILY Bromodomain 141 248 IPR036427 GO:0005515
Tsu03g01281 841 SMART bromo_6 142 250 IPR001487 GO:0005515
Tsu03g01281 841 MobiDBLite consensus disorder prediction 73 120 - -
Tsu03g01281 841 MobiDBLite consensus disorder prediction 650 665 - -
Tsu03g01281 841 MobiDBLite consensus disorder prediction 483 530 - -
Tsu03g01281 841 MobiDBLite consensus disorder prediction 739 841 - -
Tsu03g01281 841 MobiDBLite consensus disorder prediction 601 620 - -
Tsu03g01281 841 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 841 - -
Tsu03g01281 841 MobiDBLite consensus disorder prediction 586 620 - -
Tsu03g01281 841 MobiDBLite consensus disorder prediction 80 112 - -
Tsu03g01281 841 MobiDBLite consensus disorder prediction 1 41 - -
Tsu03g01281 841 MobiDBLite consensus disorder prediction 650 686 - -
Tsu03g01281 841 Pfam Bromodomain 154 235 IPR001487 GO:0005515
Tsu03g01281 841 ProSitePatterns Bromodomain signature. 167 223 IPR018359 -
Tsu03g01281 841 ProSiteProfiles Bromodomain profile. 161 231 IPR001487 GO:0005515
Tsu03g01281 841 MobiDBLite consensus disorder prediction 466 530 - -
Tsu03g01281 841 Coils Coil 54 74 - -
Tsu03g01281 841 MobiDBLite consensus disorder prediction 699 718 - -
Tsu03g01281 841 PRINTS Bromodomain signature 164 177 IPR001487 GO:0005515
Tsu03g01281 841 PRINTS Bromodomain signature 178 194 IPR001487 GO:0005515
Tsu03g01281 841 PRINTS Bromodomain signature 194 212 IPR001487 GO:0005515
Tsu03g01281 841 PRINTS Bromodomain signature 212 231 IPR001487 GO:0005515
Tsu03g01281 841 Gene3D - 148 269 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01281 Tsu-Chr3 12236980 12242240 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01281 K22184 - gmx:100792844 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01281 03 12236980 12242240 Tsu05g03872 05 49753871 49759569 PCT