Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03417 ATGCATTACTCAAATCTTCATGTAACATTAGTAGTTCTAGATGCTTCTACTCTGAATTCTATGGAGGAgaaggtgatgatgatgatggaagaAGATTCATTGGAAAATGGAATAAGAAAAGTTAGTTCGAGAGCTGAAGTTGATACTTCAATGCCGTTTGAGTCTGTTAAAGAAGCGGTTACCCGTTTTGGTGGAAGTGGACCTTGGTTACCTCTTTATAGACTTGGTGAAGCTTatAACAGTATTGAAGACTTCGACATAAAGAAAATTGAGGAACAAGCAGCGAAGTTGGAAAAGGATTTGATAATGAAAGAACTCGAAACACTTGATGTGCTTGAAGAACTAGGATCTGCTAAAACGATTCTCGAGAAACTAAAGCAGCAGCTACAATCTGAAGCACTGAAATGTTCTGCAACTCAAGATGTGAATTCATGTGAAAAGATTAAAGCCCCtgttgaaaattataaaaacaatgtCAACCATCGGGAACCGATATTGCAAAGTCCAATCCCTTGCGCTACTTCATCGCCTGATATGTTCTTAACCGAATTAAAAGAAGCTAAGAGGAACCTTGGTAAAACTATAACTGATCTCGGGACAATACAATCTTCTGTCGAAACATTGAATaaaaagatgaagaaggagAGACTTTTTCTCGAGAGGACACGGGAGAATCTACAATCAAAGTTTGCAGCTATCTCAGCTCAAAATGTGGCTAAAAAAGAAACAAGCACAAAGCCACCAGAAGCTCCTGTAGAAAAGGATTTTACTTTTGACATTCCACAAAATGTTGCAAGGAATTTCAAGTTGGATGTTGAACAGTACAATGGAATGGTTGAATTGGGATCCGCAGAAGTCTCGAAGCAAGGCATTGAGTATGGAGAGAATGAGTTTAGTATTAAGAATGCTGAGATGAGGTGGTTTGCAGCTAAAAAGATGGAAGAAGCTGCAATGGCAGCCGAAGCTGTAGCTCTTGCTGAAATCAAGGCTCTTTCTGGTGTTGATATTTCATCGCGATTTTCTACACGAGAACATCAGAAAGTGACTTCTGCATTAGAGGTGTACTCTACTCTAAATCCCGAATTTCAAATGCACGAAGAGTCtatcttgaagaaaataatacaTGCCAATTTCAAAATGAATGAAGTAAGTGCTTCTAAGCTTACTATTCTGAAAAAATTAGAGGAAGCAACCGATGAAGTTCTACGCAGCAAACAAATTTTAACAGAAGCTTTAAACGGTATTGAAAATGCAAACAGAAAGCAACGTGCTGCTGAGGAGGCTCTAAGGAGATGGATTCCTGAAAACAATGTAAAGGGTCGGGCTATGCATAACTCGATTAAGCGAAACAAGTTCAATCTAGTTCAAAATCGTCAAGCTTCGAAGCCTACTGTAAGGTCCTCAGTTTCAATGAGAGATCTACTTAGCAGAAAGCAGGTTCCTGACGAATATACTACTACGACAAAAGAGATGGAAGAGCACGCTGAAAGAAAGGTAGCATTGAGTCAAATGCTTCGATCATTGAGGGAAAATCAAACTCTTCCAACTGAACATGAGAATGACGGGGGCGATCAAAAGCAGTCCGTAGCACAAAGGAAGATGTTTGGATTCATCCGAATATCATTCCCGTTGGGAAAGCGAAATGATAAAAAGACATGA 1659 0.3767 MHYSNLHVTLVVLDASTLNSMEEKVMMMMEEDSLENGIRKVSSRAEVDTSMPFESVKEAVTRFGGSGPWLPLYRLGEAYNSIEDFDIKKIEEQAAKLEKDLIMKELETLDVLEELGSAKTILEKLKQQLQSEALKCSATQDVNSCEKIKAPVENYKNNVNHREPILQSPIPCATSSPDMFLTELKEAKRNLGKTITDLGTIQSSVETLNKKMKKERLFLERTRENLQSKFAAISAQNVAKKETSTKPPEAPVEKDFTFDIPQNVARNFKLDVEQYNGMVELGSAEVSKQGIEYGENEFSIKNAEMRWFAAKKMEEAAMAAEAVALAEIKALSGVDISSRFSTREHQKVTSALEVYSTLNPEFQMHEESILKKIIHANFKMNEVSASKLTILKKLEEATDEVLRSKQILTEALNGIENANRKQRAAEEALRRWIPENNVKGRAMHNSIKRNKFNLVQNRQASKPTVRSSVSMRDLLSRKQVPDEYTTTTKEMEEHAERKVALSQMLRSLRENQTLPTEHENDGGDQKQSVAQRKMFGFIRISFPLGKRNDKKT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03417 552 Coils Coil 87 107 - -
Tsu05g03417 552 PANTHER WEB FAMILY PLANT PROTEIN 32 551 - -
Tsu05g03417 552 Pfam Weak chloroplast movement under blue light 182 436 IPR008545 -
Tsu05g03417 552 Pfam Weak chloroplast movement under blue light 45 161 IPR008545 -
Tsu05g03417 552 Coils Coil 112 132 - -
Tsu05g03417 552 Coils Coil 209 229 - -
Tsu05g03417 552 Coils Coil 408 428 - -
Tsu05g03417 552 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 32 551 - -
Tsu05g03417 552 Coils Coil 491 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03417 Tsu-Chr5 45507223 45511143 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03417 - - cam:101496164 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01950 03 20155299 20159226 Tsu05g03417 05 45507223 45511143 ECH
Tsu05g03417 05 45507223 45511143 Tsu05g03417 05 45507223 45511143 ECH
Tsu03g01950 03 20155299 20159226 Tsu05g03417 05 45507223 45511143 PCT