Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01950 ATGGCTGAAACTCGTGAAACCGAATCGGGGACCCGTAAACCCGATCCCGGAATCGGATCGGGTGAAAACCCTAATAATGGGATTAGGAAGGTGAGTGTTCGAGCTGAGATTGATACATCGCCACCGTTCGAATCGGTGAAGGAAGCTGTGACTCGTTTCGGTGGAAGTGGACCTTGGATACCTCTTTACAGGCTTGGAGAAGCTTTTAACaattttgaagattttgatATAAAGAAAGTGGAGGAACAAGCAGCAGAGTTGGAGAAGGATTTGATTGTCAAAGAACTTGAAACACTTGACGTGCTTGAAGAATTGGGAGCTACCAAAAGGATTGTGGAGGACTTAAAGCAGCAGCTACAAAAAGAAGCATTGAAATTATCCGCAACTCCGGATTTAAATTCTTATGAACAGGTTGGAACTCCTGTTATCAAGGAGATGAACAAGGAAAGTAATGGGAATATAGTCAACAATCAAGAACAAATATCGCAAATTCCAAGTTCATGCTCTATGTCATCACCTGATATGATTTTAATGGATTTGAAACAAGCCAAAGTGAATCTTGGTAATACTATGAATGAACTTGAGGCGATACAATCATCTGTTGAATCTTTAaataagaagatgaagaaggagaaagcTTTTCTGGAGAAGACACGAGAAAAGCTAGCATCTAAGTTTGCAGCTGTGTCTGCTCAAGAGAAGGTCCAAGAGGAAGCAATATTGATACCACCATCATCTCATGTGGAATTCACTTTTGATACTCCTGCAAATATGAGGAATTTCAATTGTGATTCTGAGCAGCACAATAAAATGGTTGAGACAAGAAGATCTGAAGTTTCAAAGCCCTTTTCTGCGTATGAAGAGCATGAGTTTAATGTTAAGACAGCTGAAATGAGGTGGCTAGCAGCCAAAAAGATGGAAGAAGCTGCAAGAGCAGCAGAAGCTATTGCACTTGCCGAAATCAAGGCTCTGTCTGGCACTGAGAGATCATATGAATTCGCTCTTCCGGAACCTCGGAAAGTCACTTTTGCTTTAGCAGAAAACATTCCTCGAAACCCCAAGGCTATGATGATACCTGAGGAGCCTACCTTGAAGAAGGTAATTGATTCAAAGTTTCAATTTGATGAAACGAATATTTCTAAACTGACTATTCTGAAAAAGTTGGAGGAGGCTTCTGAAGAAATTGTACACAGCAAACAAGTCTTAACTGATGCTTTAAACAGAATTGAAACTGCAAATAGAAAGCAACATGCTGCTAAGGAAGCTCTGCGGAAATGGATACCGGAGGTTGATCTAAAGGAGAAAACAATGTATcactcttttaattttaacaagTTTAATCAAGCTGGATTTCGTCAAGATTCTTCTCTACCAGATGTAACCAGGTCAACAATAGCAAACAATAATCCAAAGCCTGTTTCGAGGCCAACAACTTCAATGAGAGATGTACTTAGCAGAAAACAAGTTCCTGAAGGATATGCTGAAAGAAAGGAGATGGAAGAGCATACTGAAAGACGAAAGGTAGCATTGAGTCAAATGCTTAGAGCATTGAGAGAAGATCTAACCCTTTCACCAAAAACTGAGAAAGATCATGAGAGCGATCAAAAGCCGACCGTGACACCAAAGAAAAAGTTTGGATTCATCCATATATCACTCCCTATGGCTAGGCCAAGTAAGAAAAGGACATGA 1689 0.3914 MAETRETESGTRKPDPGIGSGENPNNGIRKVSVRAEIDTSPPFESVKEAVTRFGGSGPWIPLYRLGEAFNNFEDFDIKKVEEQAAELEKDLIVKELETLDVLEELGATKRIVEDLKQQLQKEALKLSATPDLNSYEQVGTPVIKEMNKESNGNIVNNQEQISQIPSSCSMSSPDMILMDLKQAKVNLGNTMNELEAIQSSVESLNKKMKKEKAFLEKTREKLASKFAAVSAQEKVQEEAILIPPSSHVEFTFDTPANMRNFNCDSEQHNKMVETRRSEVSKPFSAYEEHEFNVKTAEMRWLAAKKMEEAARAAEAIALAEIKALSGTERSYEFALPEPRKVTFALAENIPRNPKAMMIPEEPTLKKVIDSKFQFDETNISKLTILKKLEEASEEIVHSKQVLTDALNRIETANRKQHAAKEALRKWIPEVDLKEKTMYHSFNFNKFNQAGFRQDSSLPDVTRSTIANNNPKPVSRPTTSMRDVLSRKQVPEGYAERKEMEEHTERRKVALSQMLRALREDLTLSPKTEKDHESDQKPTVTPKKKFGFIHISLPMARPSKKRT 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01950 562 MobiDBLite consensus disorder prediction 461 484 - -
Tsu03g01950 562 Coils Coil 102 122 - -
Tsu03g01950 562 MobiDBLite consensus disorder prediction 461 506 - -
Tsu03g01950 562 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 19 561 - -
Tsu03g01950 562 MobiDBLite consensus disorder prediction 521 539 - -
Tsu03g01950 562 Pfam Weak chloroplast movement under blue light 175 428 IPR008545 -
Tsu03g01950 562 Pfam Weak chloroplast movement under blue light 35 121 IPR008545 -
Tsu03g01950 562 MobiDBLite consensus disorder prediction 488 506 - -
Tsu03g01950 562 PANTHER WEB FAMILY PLANT PROTEIN 19 561 - -
Tsu03g01950 562 Coils Coil 177 225 - -
Tsu03g01950 562 Coils Coil 70 97 - -
Tsu03g01950 562 Coils Coil 388 408 - -
Tsu03g01950 562 MobiDBLite consensus disorder prediction 519 562 - -
Tsu03g01950 562 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01950 Tsu-Chr3 20155299 20159226 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01950 - - mtr:MTR_3g072350 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01950 03 20155299 20159226 Tsu05g03417 05 45507223 45511143 ECH
Tsu03g01950 03 20155299 20159226 Tsu03g01950 03 20155299 20159226 ECH
Tsu03g01950 03 20155299 20159226 Tsu05g03417 05 45507223 45511143 PCT