Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03405 ATGTTTGGTTCCAAATTTGAGGATGCTGCTGATCTATTTGATAAATCTGCAAATCATTATAAACTCGCCAAATCATATGTTAACAATGCTTTAGCTGTAACTCCAAAGActtggtctagtggtaaaaagacaggTCTTGAATCCGAGAGGTCTCGGGTTCGAGCCTCGTTAGTGTCTTTGGAGGGAGGGGATAAAGCAGGATCAACCTATGTTAAGTTAGCAAATTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCCTCAGCTTATGTTGATGCTGCACAttgctataaaaaaatcaatatgaaTGGTATGTATATGATTCTAATGGTGTCATTCTATTTTCAATCTGTTAAGCAGTACTTTCTTCGGTGTCATATCTTATCAGCTACACTGCCAGTGTCGTCACCTGCAAGGCATGGCTACACTGGCAGTGTCGCCATCTTTAAAGCTGCACACACACTGCACTCCCACTTGCATCGTTACTGTTGA 492 0.378 MFGSKFEDAADLFDKSANHYKLAKSYVNNALAVTPKTWSSGKKTGLESERSRVRASLVSLEGGDKAGSTYVKLANCHLKLESKHEAASAYVDAAHCYKKINMNGMYMILMVSFYFQSVKQYFLRCHILSATLPVSSPARHGYTGSVAIFKAAHTLHSHLHRYC 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03405 163 PANTHER NSF ATTACHMENT PROTEIN-RELATED 1 28 - -
Tsu05g03405 163 SUPERFAMILY TPR-like 63 101 IPR011990 GO:0005515
Tsu05g03405 163 Pfam Soluble NSF attachment protein, SNAP 64 103 - -
Tsu05g03405 163 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 28 IPR000744 GO:0006886
Tsu05g03405 163 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 64 104 IPR000744 GO:0006886
Tsu05g03405 163 Gene3D Tetratricopeptide repeat domain 61 129 IPR011990 GO:0005515
Tsu05g03405 163 PANTHER NSF ATTACHMENT PROTEIN-RELATED 64 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03405 Tsu-Chr5 45351613 45353158 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03405 K15296 - hbr:110670809 107.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01927 03 19951731 19957007 Tsu05g03405 05 45351613 45353158 ECH
Tsu05g03405 05 45351613 45353158 Tsu05g03405 05 45351613 45353158 ECH
Tsu03g01927 03 19951731 19957007 Tsu05g03405 05 45351613 45353158 PCT