LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g01927	ATGGCCGATCAGTTAGCGAGGGCAGAGGATTTCGAGAAGAAAGCTGAGAAGAAGCTTAGCGGTTGGGCCTTATTCAGTTCTAAATATGATGATGCTGCTGATCTCTTCGATAAAGCTGCAAATTCATTCAAACTCGCTAAATCATGGGACAAAGCGGGAGCAACCTACCTAAAGTTGGCGAATTGTCATTTGAAGTTGGAAAGCAAGCATGAGGCTTCACAGGCGTATGTTGATGCTGCACATTGCTATAAAAAGACTAATATAAGTGAGGCTGTATCCTGTTTAGACCAAGCTGTGAATCTTTTATGTGATATTGGTCGACTCTCTATGGCTGCTAGATATTTGAAGGAAATTGCAGAATTGTACGAGTCTGAACAAAATATTGAGCAGGCAATTGTTTACTATGAAAAAtcagctgatttttatcaaaatgaaGAGGTGACAACTTCTGCAAATCAGTGCAAGCAGAAAGTGGCCCAATTCGCTGCTCAGCTGGAACAATATCAGAAGTCTATTGATATTTATGAAGAAATTGCACGCCAATCTCTAAACAATAATCTGCTGAAATATGGAGTTAAAGGCCATCTTCTTAATGCTGGCATTTGCCAACTCTGCAAAGGGGATGTTGTTGCCATAAACAATGCATTGGAGAAATATCAGGAATTAGATCCAACATTTTCAGGAACTCGTGAATATAAATTGTTGGCGGATGTTGCTGCTGCAGTTGATGAAGAAGATGTTGTGAAGTTTACTGATGTTGTCAAGGATTTTGATAGCATGACCCCTCTGGATTCTTGGAAGACAACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTTGAGGAGGATGATCTCACATAA	870	0.3931	MADQLARAEDFEKKAEKKLSGWALFSSKYDDAADLFDKAANSFKLAKSWDKAGATYLKLANCHLKLESKHEASQAYVDAAHCYKKTNISEAVSCLDQAVNLLCDIGRLSMAARYLKEIAELYESEQNIEQAIVYYEKSADFYQNEEVTTSANQCKQKVAQFAAQLEQYQKSIDIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAINNALEKYQELDPTFSGTREYKLLADVAAAVDEEDVVKFTDVVKDFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT	289

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g01927	289	CDD	SNAP	7	278	IPR000744	GO:0006886
	Tsu03g01927	289	PRINTS	NSF attachment protein signature	28	47	IPR000744	GO:0006886
	Tsu03g01927	289	PRINTS	NSF attachment protein signature	91	108	IPR000744	GO:0006886
	Tsu03g01927	289	PRINTS	NSF attachment protein signature	119	136	IPR000744	GO:0006886
	Tsu03g01927	289	PRINTS	NSF attachment protein signature	152	175	IPR000744	GO:0006886
	Tsu03g01927	289	PRINTS	NSF attachment protein signature	183	202	IPR000744	GO:0006886
	Tsu03g01927	289	PRINTS	NSF attachment protein signature	224	244	IPR000744	GO:0006886
	Tsu03g01927	289	PRINTS	NSF attachment protein signature	255	275	IPR000744	GO:0006886
	Tsu03g01927	289	PANTHER	ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN	1	289	-	-
	Tsu03g01927	289	Gene3D	Tetratricopeptide repeat domain	5	288	IPR011990	GO:0005515
	Tsu03g01927	289	Pfam	Soluble NSF attachment protein, SNAP	7	278	-	-
	Tsu03g01927	289	SMART	tpr_5	112	145	IPR019734	GO:0005515
	Tsu03g01927	289	SMART	tpr_5	53	86	IPR019734	GO:0005515
	Tsu03g01927	289	Coils	Coil	151	185	-	-
	Tsu03g01927	289	PANTHER	SOLUBLE NSF ATTACHMENT PROTEIN SNAP	1	289	IPR000744	GO:0006886
	Tsu03g01927	289	Coils	Coil	271	289	-	-
	Tsu03g01927	289	SUPERFAMILY	TPR-like	7	280	IPR011990	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g01927	Tsu-Chr3	19951731	19957007	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g01927	K15296		-	gmx:100814639	473.781

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu03g01927	03	19951731	19957007	Tsu05g03405	05	45351613	45353158	ECH
	Tsu03g01927	03	19951731	19957007	Tsu03g01927	03	19951731	19957007	ECH
	Tsu03g01927	03	19951731	19957007	Tsu05g03405	05	45351613	45353158	PCT