Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03382 ATGGAAGTTCTCAATATAATCATCTTAGCAATTTTTGTTCTCTCGGCTACTTTCGCTAATGCCAAAGTTCACGAGCACGAGTTTGTTGTTCAAGCAACTCCAGTGAAGAGGCTGTGCAACACACAAATGAGCATTACTGTAAATGGACAATTTCCTGGTCCAACTTTGGAAGTGAATAATGGAGATACTTTGGTTGTTAAAGTTACTAATAAAGCTCGTTACAATGTCACAATTCATTGGCATGGGGTTAGGCAAATCAGAACAGGATGGGCTGATGGGCCAGAATTTGTGACACAATGTCCTATACGTCCTGGTGGAAGTTACACCTATAGATTTACCATTCAAGGACAAGAAGGTACACTTTGGTGGCATGCTCATAGTTCATGGCTTAGAGCCACAGTTTATGGAGCTTTAATCATTCACCCTAAGCAAGGAGATGATTATCCTTTCACTAAACCAAAGCGTGAAACACCTATTCTTCTAGGGGAATGGTGGGATGCAAACCCTATTAATGTTATAAGACAAGCCACACAAACAGGAGGAGCTCCAAATATATCTGATGCATACACTATCAATGGTCAACCTGGTGATCTTTACAAGTGCTCTAGCAAAGGCACAACAATTGTTCCAATAGATTCAGGAGAAACAAATCTCATAAGAGTAATCAATGCAGGATTAAACCAACCACTTTTCTTCACAATTGCTAATCACAAATTAACAGTAGTAGGTGCTGATGCTTCCTATGTTAAACCATTCACAACCAATGTCCTAATGTTAGGACCTGGCCAAACCACTGATGTTCTAATCAATGGTGACCAACCACCATCAAGATACTACATCGCCGGACGCGCTTACCAATCCGCTCAAAACGCTCCATTCGATAACACAACAACTACTGCAATTCTTGAATATAAATCAGCACCATGTCCTgcaaaagggggtgcaaatatcaaacCTATTATGCCTACTTTACCTAATTACAATGACACAAACACTGTTACTTCCTTTAGTAAAAGCTTTAGAAGTCTTAGAGAAGTTGAAGTTCCaaatgaaattgatgaagatCTTTTCTTTACTATTGGATTAGGACTCAACAATTGTCCATCGAATTTCAACGCAAATCAGTGTCAAGGACCGAACGGAACACGGTTCACTTCTAGTATGAACAATGTGTCTTTTGTACTTCCTAGCAATTTTTCAATCTTGCAAGCTCATAAACTTGGAGTACAAGGTGTTTTTACTACCGATTTTCCCGCAAAGCCACCAGTGAAATTCGATTACACCGGTAATGTGAGTCGGTCGCTCTGGCAACCGATTCCAGGGACTAAAGTTACTAAGTTGAAATTCGGATCAAGGGTTCAAATTGTTTTGCAAGATACTAGTATTGTCACTCCTGAGAATCACCCTATTCATCTTCATGGATATGATTTTTATATTGTTGCTGAGGGATTTGGAAATTTTGACCCTAAGAAAGATGCTTCAAAATTTAACCTTGTTGATCCACCTATGAGGAACACTGTGGCTGTTCCTGCTAATGGTTGGGCAGTTATCAGATTTGTTGCCGACAATCCAGGTGTTTGGATTATGCATTGTCACTTGGATGTTCACATTGGATGGGGTTTAGCTACTGTGTTCTTGGTAGAAGATGGAGAAGGGCTATTGGAATCCATAGAATCCCCTCCAGAGGACTTGCCTTTGTGTTAG 1704 0.392 MEVLNIIILAIFVLSATFANAKVHEHEFVVQATPVKRLCNTQMSITVNGQFPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGVRQIRTGWADGPEFVTQCPIRPGGSYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPKQGDDYPFTKPKRETPILLGEWWDANPINVIRQATQTGGAPNISDAYTINGQPGDLYKCSSKGTTIVPIDSGETNLIRVINAGLNQPLFFTIANHKLTVVGADASYVKPFTTNVLMLGPGQTTDVLINGDQPPSRYYIAGRAYQSAQNAPFDNTTTTAILEYKSAPCPAKGGANIKPIMPTLPNYNDTNTVTSFSKSFRSLREVEVPNEIDEDLFFTIGLGLNNCPSNFNANQCQGPNGTRFTSSMNNVSFVLPSNFSILQAHKLGVQGVFTTDFPAKPPVKFDYTGNVSRSLWQPIPGTKVTKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPKKDASKFNLVDPPMRNTVAVPANGWAVIRFVADNPGVWIMHCHLDVHIGWGLATVFLVEDGEGLLESIESPPEDLPLC 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03382 567 ProSitePatterns Multicopper oxidases signature 1. 525 545 IPR033138 -
Tsu05g03382 567 SUPERFAMILY Cupredoxins 348 567 IPR008972 -
Tsu05g03382 567 CDD CuRO_3_LCC_plant 412 550 IPR034289 GO:0005507
Tsu05g03382 567 TIGRFAM laccase: laccase 21 567 IPR017761 GO:0046274|GO:0048046|GO:0052716
Tsu05g03382 567 ProSitePatterns Multicopper oxidases signature 2. 530 541 IPR002355 GO:0005507
Tsu05g03382 567 Gene3D - 155 346 IPR008972 -
Tsu05g03382 567 Gene3D - 24 154 IPR008972 -
Tsu05g03382 567 CDD CuRO_1_LCC_plant 26 142 IPR034288 GO:0005507
Tsu05g03382 567 Pfam Multicopper oxidase 156 306 IPR001117 -
Tsu05g03382 567 CDD CuRO_2_LCC_plant 158 304 IPR034285 -
Tsu05g03382 567 Pfam Multicopper oxidase 30 144 IPR011707 GO:0005507
Tsu05g03382 567 Pfam Multicopper oxidase 417 550 IPR011706 GO:0005507|GO:0016491
Tsu05g03382 567 Gene3D - 368 567 IPR008972 -
Tsu05g03382 567 PANTHER MULTI-COPPER OXIDASE 9 567 IPR045087 -
Tsu05g03382 567 SUPERFAMILY Cupredoxins 19 169 IPR008972 -
Tsu05g03382 567 PANTHER LACCASE 9 567 - -
Tsu05g03382 567 SUPERFAMILY Cupredoxins 150 343 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03382 Tsu-Chr5 45186297 45190151 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03382 K05909 - gmx:100796956 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01913 03 19836656 19840473 Tsu05g03382 05 45186297 45190151 ECH
Tsu05g03382 05 45186297 45190151 Tsu05g03382 05 45186297 45190151 ECH
Tsu03g01913 03 19836656 19840473 Tsu05g03382 05 45186297 45190151 PCT