Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03366 ATGGCAGTTCCAGTTCCAGCTGAAGACAACTTcttcaaacaaaagaaatacCCTTTTATTCTAACTCTCTCTATCTTACTCATCTTTGTCACGCTCTtccttgtaaccacaaacaccACCTCAAACCCTCTTATTTTCTACTCTAATGTCAAACACATTCCAAAACCACCCTTCAAACCTTCTTCCTCTATCTCTCTACCTATAGAGAATTCAGATTCTCCAATAATAACTCCAAAACTACCCTCAAAGCTACCATCAAAGGAACAAGGATTGCCACAAAAGGAAGAAGCTTTAACTATTGATTGGAAGCTTTGTAAGGATCCTATTACAGTTGATTATATACCATGTTTAGATAACTATAAAGCTATTATGGCTTTGAAATCAAGAAGACATATGGAACATAGAGAAAGACATTGTCCTGAAACTAGTCTTAATTGTTTGTTGCCTCTTCCTAAAGGGTATAAAGTTCCAGTTCATTGGCCTAAAAGTAGGGATATGATTTGGTATGATAATGTTCCTTATCCAAAGCTAGTTGAGTACAAGAAAGACCAACATTGGGTTGTGAAATCAGGCGAATATCTCAAATTTCCAGGTGGTGGTACTCAATTTAAAGACGGTGTTGATCATTATATCAAGTTCATCGAGAAGACATTAGCGAAAATTCAATGGGGAAAGCATATTAGGGTTGTTCTAGATGTTGGTTGTGGTGTTGCTAGCTTTGGTGGCTATTTGCTGGACAAAAATGTTATTACTATGTCATTTGCACCGAAGGACGAACATGAAGCTCAGATACAGTTTGCTTTGGAGCGAGGAATTCCTGCAACACTTTCAGTCATTGGAACACAAAAGTTGACTTTTCCTGACAATGGTTTCGATTTGATCCATTGTGCACGATGCAGAGTTCACTGGGATGCAGATGGTACTTAtctatttgtttttcaattaataTCAATATCTGATAGGTATGTTTATTCACAAATTTGGTTTATAACTTTAGGGGGTAAACCGTTATACGAACTCAATAGGGTTCTTAGACCTGGCGGTTATTTTGCATGGTCTGCAACACCAGTTTATCGAGATGATGATCGAGATCAGAAAGTATGGAAAGCCATGGTCGCTATAACAAAAGCTATGTGCTGGAAGGTTGTGGCTAAGGCCGACGATTCATCTGGAATAGGGCTTGTCATATACCAGAAGCCTACTTCATCTTCTTGCTACGAGAAACGTAAAGAGAACAATCCACCATTATGCGAAAATGCAGATGGGAAAAATAGCTCATGGTATGCCCGACTAAATAATTGCCTTACCCCTCTTCCGGTTGACGGTAACGGTAAACTGCAGAGCTGGCCCAAGCCTTGGCCTCAGAGGCTTACCAGTAAGCCCCCTAGCTTACCTAGCAATTCAAAGGTCATTGAGGAGTTCAACAAGGATAGCAACCACTGGTCTCAACTAGTGTCAGAAGTTTATGCGGACGGTCTTTCGATTAAATGGTCAAGTGTTCGAAATGTAATGGACATGAATGCTGGTTATGCAGGATTTGCCGCAGCTCTCATTGATCGACCAATATGGATAATGAATGTAGTACCCATTGATATGCAGGATACACTTTCTATTATAATGGACCGAGGATTAATAGGAATGTATCATGATTGGTGCGAATCCTTTAGTACCTATCCCCGCACATATGACCTCCTTCATTCTAGCTTTCTTTTCAAACATCTCGAGCAAAGATGTGACCTCGTAGACGTTGTTGTGGAGATAGATCGTATATTGAGACCAAATGGATATCTTGTGATTCAAGATTCCATGGAAATGCTTAGCAAACTGAGTCCAATCTTGCATTCACTTCACTGGTCTGTAACGTTGCATCAAAATCAGTTTCTTGTCGGTAGGAAAAGTTTTTGGCGTCCCATGAGCTCATGA 1923 0.3895 MAVPVPAEDNFFKQKKYPFILTLSILLIFVTLFLVTTNTTSNPLIFYSNVKHIPKPPFKPSSSISLPIENSDSPIITPKLPSKLPSKEQGLPQKEEALTIDWKLCKDPITVDYIPCLDNYKAIMALKSRRHMEHRERHCPETSLNCLLPLPKGYKVPVHWPKSRDMIWYDNVPYPKLVEYKKDQHWVVKSGEYLKFPGGGTQFKDGVDHYIKFIEKTLAKIQWGKHIRVVLDVGCGVASFGGYLLDKNVITMSFAPKDEHEAQIQFALERGIPATLSVIGTQKLTFPDNGFDLIHCARCRVHWDADGTYLFVFQLISISDRYVYSQIWFITLGGKPLYELNRVLRPGGYFAWSATPVYRDDDRDQKVWKAMVAITKAMCWKVVAKADDSSGIGLVIYQKPTSSSCYEKRKENNPPLCENADGKNSSWYARLNNCLTPLPVDGNGKLQSWPKPWPQRLTSKPPSLPSNSKVIEEFNKDSNHWSQLVSEVYADGLSIKWSSVRNVMDMNAGYAGFAAALIDRPIWIMNVVPIDMQDTLSIIMDRGLIGMYHDWCESFSTYPRTYDLLHSSFLFKHLEQRCDLVDVVVEIDRILRPNGYLVIQDSMEMLSKLSPILHSLHWSVTLHQNQFLVGRKSFWRPMSS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03366 640 PANTHER PMT16, PUTATIVE-RELATED 7 308 - -
Tsu05g03366 640 PANTHER PMT16, PUTATIVE-RELATED 329 640 - -
Tsu05g03366 640 Gene3D Vaccinia Virus protein VP39 181 386 IPR029063 -
Tsu05g03366 640 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 329 640 IPR004159 GO:0008168
Tsu05g03366 640 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 7 308 IPR004159 GO:0008168
Tsu05g03366 640 Gene3D Vaccinia Virus protein VP39 462 632 IPR029063 -
Tsu05g03366 640 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 361 IPR029063 -
Tsu05g03366 640 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 112 311 IPR004159 GO:0008168
Tsu05g03366 640 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 327 626 IPR004159 GO:0008168
Tsu05g03366 640 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 469 618 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03366 Tsu-Chr5 45043151 45046718 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03366 - - gmx:100800390 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03366 05 45043151 45046718 Tsu05g03366 05 45043151 45046718 ECH
Tsu03g01896 03 19614026 19617509 Tsu05g03366 05 45043151 45046718 PCT