Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03361 ATGGAAACTACACAACCATCTCCTTCTAAACCTAACAACGATAACGAACAAATCGACgatgaagaagaacaagaagaagaagaagaatacgAATACGAAGAaatcgaagaagaagaagaacaaattCCCCAATCAACAGAATCAAAATTACGCAACCAACGTTTCAAAGTACAAACCCTATCTCGTCGATTATCATCAGAATTAATCCCAATTCGAGTCCACGATGTAATAATCAACGGAAACACCAAAACTAAGGATTGGATTATTGAAGCTGAACTTAATGGAATCGAAAAAGCTACTACAATGCAAGAACTTATGCAAGCTTCACAAATCGCTGTTGCGAAACTTCAAGGTCTTGAAATTTTTGACTCTTGTAAGGTTAAACTTGAAGCTGGACCGATTGAATTGCCTGATACTGCTAATGttattgttgatgttgttgaaaCGGAGAATAAGCTTTCTGGTGCTTTTGGTGTTTATATGAAACCTTCGactAATACATGGACATCTGAAGGATCTGTTAAGTATAAGAATGTTTTTGGTTATGGTGATCTATGGGATGCGTCTTTGGCCTATGGTGGCAACCAGGCAACAGAAGTGAGCTTAGGGGTGTATGCTCCTCGTATGAAAGGATTTTTAACTCCTCTTCTGGCACGAATGTTCATGTCTTCTCAAGACTGGCAGGAGTATTCTTCGTACAAAGAGAAATTGGTAGGATTGTCTCTTGATTTGATATCGACAAAGCACCAGGACTTAGTATACACTCTTGGATGGCGTACCTTAACAGATCCATCACAAATGGCATCCAGGTCTACAAGGAGGGAGCTTGGCCATGGGTTACTGTCGTCTTTGaaatatacttttaaatttgaTAGGAGAGATTCGCCTTTTAGGCCTACAAAAGGATATGCTTTTGTTTCTACCACTCGCTTTGGTGGTCTTACGCCGGACCACCGGAGCTTGCGGTTTCTGCGCCAGGAGTTTGATGTTCGCCTTGCTGTCCCTTTTGGATTTTATAATACAGCATTGAACCTTGGAATATCTGCTGGGGTTGTTTTTCCATGGGGGCAAGGGTTCAGGAACAAGCCATCTCCCCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTAGGAGGGCCAACAACATTATGGGGATTCAAAACTAGGGGAGTAGGTCCTACTGAACCACGGAGGCAAAGAAGGGATGAAGAAAATGATGGCACACATGACTGCATTGGAGGAGATCTTTCTGTTACTGCTTTTGCAGACCTCTCTTTTGATCTTCCTATTAGGTGGTTGAGAGACCAAGGAATACATGCACACATTTTTGCTGGTTCTGGGAATGTTGCTAAATTAACTCAGGACGAATACAAACATTTTTCTCCTCGGAAGTTCTTGGACTCCTTTCGGTTGTCCACCGGATGTGGAATTGTTATTCCTACTAGACTCTTCCGCCTAGAGGCTAACTACGTCCACCTGCTTAGGAAGGATGAGCATGATCGTGGGAAGACTGGATTTAGGTTCAGTTTCTCAGCTCCTTTTTAG 1560 0.4032 METTQPSPSKPNNDNEQIDDEEEQEEEEEYEYEEIEEEEEQIPQSTESKLRNQRFKVQTLSRRLSSELIPIRVHDVIINGNTKTKDWIIEAELNGIEKATTMQELMQASQIAVAKLQGLEIFDSCKVKLEAGPIELPDTANVIVDVVETENKLSGAFGVYMKPSTNTWTSEGSVKYKNVFGYGDLWDASLAYGGNQATEVSLGVYAPRMKGFLTPLLARMFMSSQDWQEYSSYKEKLVGLSLDLISTKHQDLVYTLGWRTLTDPSQMASRSTRRELGHGLLSSLKYTFKFDRRDSPFRPTKGYAFVSTTRFGGLTPDHRSLRFLRQEFDVRLAVPFGFYNTALNLGISAGVVFPWGQGFRNKPSPLPERFYLGGDFSPVCTLGGPTTLWGFKTRGVGPTEPRRQRRDEENDGTHDCIGGDLSVTAFADLSFDLPIRWLRDQGIHAHIFAGSGNVAKLTQDEYKHFSPRKFLDSFRLSTGCGIVIPTRLFRLEANYVHLLRKDEHDRGKTGFRFSFSAPF 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03361 519 Pfam Omp85 superfamily domain 178 517 IPR000184 GO:0019867
Tsu05g03361 519 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 156 519 - -
Tsu05g03361 519 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 5 517 - -
Tsu05g03361 519 MobiDBLite consensus disorder prediction 1 51 - -
Tsu05g03361 519 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 5 517 IPR039910 -
Tsu05g03361 519 MobiDBLite consensus disorder prediction 398 414 - -
Tsu05g03361 519 Coils Coil 18 41 - -
Tsu05g03361 519 Gene3D membrane protein fhac 70 149 - -
Tsu05g03361 519 MobiDBLite consensus disorder prediction 394 414 - -
Tsu05g03361 519 MobiDBLite consensus disorder prediction 16 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03361 Tsu-Chr5 45006904 45011414 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03361 K07277 - gmx:100802876 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03361 05 45006904 45011414 Tsu05g03361 05 45006904 45011414 ECH
Tsu03g01883 03 19508628 19513159 Tsu05g03361 05 45006904 45011414 PCT