Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01883 atgGAAAACTCAACGAACCCTAACAATGTCAAACCCCAACGTCTCATCGAAGAAAACGAAGACGAAGACATCGACGAACAAGAAGacgaagaggaagaagaagaagaagacgatCTCCCTCAATCCCCATTGGCCCGTTTACGAGAGCAGAAATTCAAGCTTGAAACCCTTTCCCGACGACTCTCATCGGAGCTAGTCCCAATCCGAGTCCACGATGTCATAATTCGCGGCAACACGAAAACCAAGGATTGGGTTATTGAAGCAGAACTCAAGGGAATCGAAGATGTATCCACTATGCAGGAACTCATTCGCGCCTCTGAAATTGCACTCGCTAGGCTTCAGAATCTCGGGGTTTTTGAGTCTAGTAAGCTTAGTCTTGAGCCTGGACCGGTGGAATTGCCTAACACTGCTaatgttgttattgatgttgttgAAGCTGTTAACAAAATTTCTGGTGAATTTGGTGTTTATACCAAACCCTCGACTAGTTCTTGGACTGCTGAAGGCACTCTTAAGTACAAAAACTTGTTGGGTTATGGTGATCTATGGGATGCTTCTTTGGCTTACGGTGCCAACCAAGCAACAGAGGTGAGTCTAGGGCTATATGCTCCTCGACTTAAAGGAACTTCAAATCCCGTTGTAGCACGACTGTCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCGTACAAAGAGCAATTGTTGGGCATGTCTCTTGGCTTAATCTCAACAAAGCACCATGATTTGGCATACACTCTTGGATGGCGTACCTTAACAGATCCATTACAAATGGCATCCAGGTCTGTAAGGAGGCAGCTTGGGCATGGTTTGCTATCATCTTTGAAGTATACATTTAAAATTGATAGGAGAAACTCACCAATTAGGCCTACAAAAGGACATGCTTTTGTTGCTACTACTCACCTTGGTGGCCTTACACCAGATCACCGGAGCTTGCGGTTTCTGCGTCAGGAGTTTGATCTTCGGTTTGCTGTCCCCTTTGGGTTTTATAATACAGCACTGAACCTAGGGGTTTCTGCTGGTGCTATTTTTCCATGGGGACAAGGTTTCATGAACAGGCCATCTCCCCTTCCTGAACGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTTGGAGGACCAATGACATTGTGGGGATTTAGAACTAGGGGATTAGGTCCGGCTGAACCACGAAGAAAAAGCAGAGATGTATTCAATGATGAAAGCGATGATCCCTCTAGGTGGGACTTCGTTGGAGGAGATCTTGCTGTTACAGCTTTTGCAGACCTCTCTTTTGATCTTCCAATTACGTGGTTAAGACAACACGGGATCCATGGCCATGTTTTTGCTGGTGCCGGGAATACTGCTAAGTTAACTCAGAATGAATATAGGCAATTCTCTCCTCGGAGGTTCTTAGAATCCTTTCGAACATCAGTGGGATGTGGATTTGTTATTCCTACTAGACTTTTCCGCCTAGAGGCTAACTACTACTACATACTCAGGCAGACTGAACATGATCGTGGCAAAACTGGATTTAGGTTCAGCTTCTCAGCTCCTTCATAG 1566 0.4387 MENSTNPNNVKPQRLIEENEDEDIDEQEDEEEEEEEDDLPQSPLARLREQKFKLETLSRRLSSELVPIRVHDVIIRGNTKTKDWVIEAELKGIEDVSTMQELIRASEIALARLQNLGVFESSKLSLEPGPVELPNTANVVIDVVEAVNKISGEFGVYTKPSTSSWTAEGTLKYKNLLGYGDLWDASLAYGANQATEVSLGLYAPRLKGTSNPVVARLSMLSQDWQEFSSYKEQLLGMSLGLISTKHHDLAYTLGWRTLTDPLQMASRSVRRQLGHGLLSSLKYTFKIDRRNSPIRPTKGHAFVATTHLGGLTPDHRSLRFLRQEFDLRFAVPFGFYNTALNLGVSAGAIFPWGQGFMNRPSPLPERFYLGGDFSPVCTLGGPMTLWGFRTRGLGPAEPRRKSRDVFNDESDDPSRWDFVGGDLAVTAFADLSFDLPITWLRQHGIHGHVFAGAGNTAKLTQNEYRQFSPRRFLESFRTSVGCGFVIPTRLFRLEANYYYILRQTEHDRGKTGFRFSFSAPS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01883 521 Gene3D membrane protein fhac 67 146 - -
Tsu03g01883 521 Pfam Surface antigen variable number repeat 68 145 IPR010827 GO:0019867
Tsu03g01883 521 Coils Coil 16 37 - -
Tsu03g01883 521 MobiDBLite consensus disorder prediction 19 39 - -
Tsu03g01883 521 Pfam Omp85 superfamily domain 175 518 IPR000184 GO:0019867
Tsu03g01883 521 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 7 519 - -
Tsu03g01883 521 Coils Coil 44 64 - -
Tsu03g01883 521 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 157 519 - -
Tsu03g01883 521 MobiDBLite consensus disorder prediction 1 45 - -
Tsu03g01883 521 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 7 519 IPR039910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01883 Tsu-Chr3 19508628 19513159 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01883 K07277 - gmx:100785408 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01883 03 19508628 19513159 Tsu03g01883 03 19508628 19513159 ECH
Tsu03g01883 03 19508628 19513159 Tsu05g03361 05 45006904 45011414 PCT