Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu05g03353 | ATGGCGGCCGCGAACGCTCCGATCGCCATGAAAGAAGTCCTAACCTTACCGAGTGTTGGAATCAATTCACAATTCATCACTTTCACGCATGTGACTATGGAATCGGAAAAGTATATATGTGTTCGAGAAACATCTCCACAGAATAGTGTTGTTATTGTTGATATGAGCATGCCAAATCAACCTTTGAGGAGGCCGATTACTGCTGATTCGGCTCTAATGAATCCAAATTCAAGAATTCTTGCTTTGAAAGCTCAATTGCAAGGGACTACACAGGATCACctacaaatatttaacattgaATTGAAAACAAAGATGAAATCACATCAGATGCCCGAGCAGGTAGCCTTCTGGAAGTGGATTAGCCCCAAAATGTTGGGCCTCGTGACACAAACCTCTGTATACCACTGGTCAATCGAAGGTGATTCTGAACCTGTTAAGATATTTGAGAGAACAGCAAATTTGGCGAACAACCAGATCATCAATTATCGATGCGACCCTACAGAAAAATGGCTGGTCTTGATTGGTATTGCTCCTGGTTCCCCCGAGAGGCCACAATTGGTTAAAGGGAACATGCAGCTTTTCTCTGTGGATCAGCAGCGTAGTCAGGCACTTGAAGCTCATGCTGCATCATTTGCTCAATTCAAAGTTCCTGGGAATGAAAATCCTTCTGTTTTGATTTCTTTTGCCTCAAAGACACTTAATGCTGGTCAAGTTATATCCAAGTTACATGTCATTGAACTGGGCGCGCAGCCAGGGAAACCATCATTTTCAAAGAAACAAGCAGATCTTTTCTTCCCCCCAGATTTTGCTGATGACTTTCCAGTTGCAATGCAGaTTTCCCACAAATATAGTTTGATTTATGTGATCACCAAACTTGGACTGCTTTTTGTATACGATTTGGAGACAGCTACTGCTGTATATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACATCAGAAGCCACGTCAGCAGGAGGATTTTATGCCATTAATAGGAGAGGCCAAGTTTTGTTGGCCACTGTTAATGAACAAACAATCGTGAATTTTGTCAGCGGTCAATTAAACAATTTGGAGCTAGCTGTTAGTCTTGCCAAAAGAGGAAATCTTCCCGGTGCTGAGAAGCTGGTTGTGGAACGTTTTCATGAATTGTTTTCCCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAATCTCCACAAGGAATCCTTCGTACTCCTGACACAGTTGCCAAATTTCAGAGTGTTCCGGTGCAAGCTGGCCAAACTCCGCCGCTGCTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGCTGAATGCCTTTGAATCATTAGAGTTATCTCGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTTGTTAAGACTGTGGACAATGATCTTGCTTTAAAAATATACATCAAAGCTAGAGCTACTCCGAAAGTTGTTGCTGCTTTTGCTGAGAGGAGGGAGTTTGACAAGATTCTGGTCTACTCTAAGCAGGTTGGGTACACACCTGATTACCTCTTCCTCTTGCAAACAATTCTCCGAACAGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAATTGATTACAACACCATAACTGATCTGTTTCTTCAGAGAAACCTGATCCGTGAGGCAACAGCTTTTCTCCTGGATGTTTTAAAACCAAATTTACCAGAACACGGATTCCTTCAAACAAAGGTGTTGGAGATAAATCTGGTCACTTTCCCTAATGTTGCTGATGCTATTTTGGCCAATGGCATGTTCAGCCACTATGACCGTCCTCGTATTGCCCAGCTTTGTGAAAAAGCTGGCCTTTACGTGCGAGCTTTGCAACATTACACAGAGTTACCAGATATAAAACGTGTGATTGTTAATACACATGCAATTGAGCCTCAGTCACTTGTAGAATTTTTTGGTACTCTCTCACGAGAATGGGCATTAGAGTGCATGAAAGACTTATTACTGGCCAATCTTAGGGGCAATTTACAGATTATTGTGCAGGTAGCTAAAGAATATTCTGAACAATTGGGCGTTGATGGCTGCATTAAAATTTTTGAGCAGTTTAGGTCATATGAAGGGCTGTATTTTTTTCTTGGATCATATTTGAGCTCCAGCGAGGACCCCGAAATTCATTTCAAGTACATTGAGGCAGCAGCAAAGACTGGTCAAATCAAGGAGGTCGAGCGTGTGACAAGAGAATCCAATTTCTATGATGCCGAGAAAACGAAGAACTTCCTAATGGAGGCTAAGCTTCCAGATGCACGACCTTTAATCAATGTTTGTGATCGATTTGGGTTTGTTCCAGATCTGACACACTACCTATACACAAACAACATGCTTCGCTACATTGAAGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTTGTTGGGCAGCTGCTAGATGATGAGTGCCCAGAAGATTTCATCAAAGGTTTGATTCTTTCTGTTCGTTCCTTGCTGCCAGTGGAACCCCTTGTAGAGGAGTGTGAGAAGAGGAATCGGCTTCGTTTGCTCACACAGTTTTTGGAGCATCTAGTGAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATCATTATTGATAGCAACAACAACCCAGAACATTTTCTCACAAGCAACCCATACTATGATTCTCGAGTTGTGGGCAAGTATTGTGAGAAACGCGACCCGACCTTGGCAGTTGTAGCTTACAGACGAGGACAATGTGATGAAGAACTTATCAATGTCACTAGTAAAAATTCTTTGTTCAAACTGCAAGCAAGATATGTTGTTGAGAGAATGGATGGTGATCTGTGGGCTCAAGTTCTTGATCCTGAAAATGAATATAGAAGGCAACTTATTGATCAGGTTGTATCTACCGCTTTGCCTGAAAGCTCAAGCCCTGAACAGGTTTCTGCAGCTGTTAAGGCTTTCATGACAGCCGATCTGCCTCATGAATTGATTGAACTTCTTGAGAAGATTGTACTTCAGAATTCTGCATTCAGTGGGAACTTCAATTTGCAGAATCTTCTCATTTTGACAGCGATAAAGGCTGATTCATCCAGAGTTATGGATTATGTCAATAGACTGGATAATTTTGATGGGCCTGCAGTTGGAGAAATGGCTGTAGAAGCACAGTTGTATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTGAATGTTCAAGCAGTCAATGTGTTGCTTGATAATATTCGTAGCATAGATAGAGCTGTTGAGTTTGCTTTCAGAGTTGAAGAAGATGCTGTTTGGAGTGAGGTGGCAAAGGCTCAACTCAGGGAAGGGCTTGTAAGTGATGCAATTGAGTCATTTATACGAGCAGATGATACTACACAATTTTTGGATGTTATCCGTGCCGCTGAAGATGCCAATGTTTACCATGACTTGGTCAAATACTTGTTAATGGTAAGACAGAAGGCAAAAGAACCAAAGGTTGACGGCGAGCTCATTTACGCATATGCAAAGATTGATAGGCTTAGTGACATTGAGGAGTTCATTCTGATGCCAAATGTTGCTAATTTGCAAAATGTTGGGGACCGGTTGTATGACGAAGCATTATACGAGGCTGCAAAAATCATATATACCTTTATATCTAACTGGGCCAAGTTGGCTATTACATTGGTCAAGTTACAACAGTTCCAAAGTGCTGTTGATGCAGCAAGGAAAGCTAACAGCTCCAAAACATGGAAAGAAGTTTGTTTTGCTTGTGTTGACGCAGAGGAGTTTCGTTTGGCCCAGATATGTGGGCTCAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTACTTCAATGAGTTAATATCTCTAATGGAGAGCGGTTTAGGGTTAGAACGAGCTCATATGGGCATCTTCACTGAGTTAGGAGTTCTATATGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTCTCAACCCGCCTCAATATCCCAAAGCTCATAAGAGCATGTGATGAACAACAGCATTGGAAAGAATTGACCTTTTTGTATATCCAATATGATGAGTTTGATAATGCCGCAACTACTATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGCTGTTAAAGTTGCTAATGTTGAGTTGTCTTACAAGGCTGTTCACTTCTATTTGGAAGAACATCCTGATCTCATCAATGATATTCTTAATGTCCTTGCACTTCGCGTGGACCACGCTCGGGTTGTTGACATCATGCGTAAGGCTGGTCACCTCCGTCTTGTGAAGCCATACATGGTTGCAGTTCAGAGCAACAACGTGTCTGCTGTAAATGAAGCCCTGAACGAGATATATGTTGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTACATGATAATTTTGATCAAATAGGCCTTGCTCAAAAGATTGAAAAGCATGAGCTTGTTGAGATGAGACGTGTCGCTGCTTATATTTACAAGAAGGCAGGACGGTGGAAGCAGTCCATTGCTTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCTTCACAATCTGGGGAGCGTGAACTTGCCGAAGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAGGAATGCTTTGCCTCATGTCTATTCGTTTGCTATGATTTAATACGAGCAGACGTTGTTCTTGAATTAGCTTGGATGCACAATATGATCGACTTTGCCTTCCCATACCTCTTACAGTTTATCCGTGAGTACACCGGCAAAGTGGATGAACTAGTGAAAGACAGAATTGAAGCACAAAATGAAGTGAAGTctaaagagaaagaagaaaaggatGTAGTTGCACAACAGAACATGTATGCTCAATTGTTGCCTCTTGCTTTACCTGCACCACCGATGCCTGGAATGGGAGGACCAGGTTATGGAGGAAGCTATGCGCCTCCCCCTCCGGTGGGTGGAATGGGGATGCCCCAAATGCCTCCTTTTGGGATGCCACCCAGTTACTAA | 5112 | 0.4188 | MAAANAPIAMKEVLTLPSVGINSQFITFTHVTMESEKYICVRETSPQNSVVIVDMSMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIELKTKMKSHQMPEQVAFWKWISPKMLGLVTQTSVYHWSIEGDSEPVKIFERTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFASKTLNAGQVISKLHVIELGAQPGKPSFSKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSAGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVSLAKRGNLPGAEKLVVERFHELFSQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILVYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPIDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLANLRGNLQIIVQVAKEYSEQLGVDGCIKIFEQFRSYEGLYFFLGSYLSSSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTSNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTSKNSLFKLQARYVVERMDGDLWAQVLDPENEYRRQLIDQVVSTALPESSSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADSSRVMDYVNRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSEVAKAQLREGLVSDAIESFIRADDTTQFLDVIRAAEDANVYHDLVKYLLMVRQKAKEPKVDGELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEALYEAAKIIYTFISNWAKLAITLVKLQQFQSAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTFLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELSYKAVHFYLEEHPDLINDILNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELVEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADVVLELAWMHNMIDFAFPYLLQFIREYTGKVDELVKDRIEAQNEVKSKEKEEKDVVAQQNMYAQLLPLALPAPPMPGMGGPGYGGSYAPPPPVGGMGMPQMPPFGMPPSY | 1703 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu05g03353 | 1703 | Coils | Coil | 1617 | 1644 | - | - | |
| Tsu05g03353 | 1703 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 700 | 842 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | SUPERFAMILY | ARM repeat | 457 | 793 | IPR016024 | - | |
| Tsu05g03353 | 1703 | Coils | Coil | 1477 | 1497 | - | - | |
| Tsu05g03353 | 1703 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1142 | 1283 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | PIRSF | CHC | 3 | 1686 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Tsu05g03353 | 1703 | Gene3D | - | 1 | 377 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Tsu05g03353 | 1703 | PANTHER | CLATHRIN HEAVY CHAIN RELATED | 1 | 1701 | - | - | |
| Tsu05g03353 | 1703 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 993 | 1138 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | SUPERFAMILY | ARM repeat | 1196 | 1531 | IPR016024 | - | |
| Tsu05g03353 | 1703 | SUPERFAMILY | ARM repeat | 1051 | 1195 | IPR016024 | - | |
| Tsu05g03353 | 1703 | PANTHER | CLATHRIN HEAVY CHAIN | 1 | 1701 | - | - | |
| Tsu05g03353 | 1703 | Pfam | Clathrin-H-link | 369 | 434 | - | - | |
| Tsu05g03353 | 1703 | SMART | CLH_2 | 993 | 1138 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | SMART | CLH_2 | 1288 | 1434 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | SMART | CLH_2 | 1142 | 1283 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | SMART | CLH_2 | 1437 | 1596 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | SMART | CLH_2 | 847 | 986 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | SMART | CLH_2 | 551 | 693 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | SMART | CLH_2 | 700 | 842 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1288 | 1434 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | Gene3D | - | 1542 | 1638 | - | - | |
| Tsu05g03353 | 1703 | SUPERFAMILY | Clathrin heavy-chain terminal domain | 5 | 343 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Tsu05g03353 | 1703 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 551 | 697 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1437 | 1580 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | SUPERFAMILY | ARM repeat | 901 | 1066 | IPR016024 | - | |
| Tsu05g03353 | 1703 | Pfam | Clathrin propeller repeat | 154 | 197 | IPR022365 | - | |
| Tsu05g03353 | 1703 | Pfam | Clathrin propeller repeat | 20 | 55 | IPR022365 | - | |
| Tsu05g03353 | 1703 | Pfam | Clathrin, heavy-chain linker | 344 | 367 | IPR015348 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Tsu05g03353 | 1703 | Pfam | Region in Clathrin and VPS | 993 | 1131 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | Pfam | Region in Clathrin and VPS | 1146 | 1281 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | Pfam | Region in Clathrin and VPS | 701 | 840 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | Pfam | Region in Clathrin and VPS | 1440 | 1579 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | Pfam | Region in Clathrin and VPS | 850 | 983 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | Pfam | Region in Clathrin and VPS | 1292 | 1431 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | Pfam | Region in Clathrin and VPS | 555 | 690 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 847 | 986 | IPR000547 | GO:0006886|GO:0016192 | |
| Tsu05g03353 | 1703 | Gene3D | Tetratricopeptide repeat domain | 1056 | 1196 | IPR011990 | GO:0005515 | |
| Tsu05g03353 | 1703 | Gene3D | Tetratricopeptide repeat domain | 1197 | 1536 | IPR011990 | GO:0005515 | |
| Tsu05g03353 | 1703 | Gene3D | Tetratricopeptide repeat domain | 903 | 1055 | IPR011990 | GO:0005515 | |
| Tsu05g03353 | 1703 | SUPERFAMILY | ARM repeat | 345 | 500 | IPR016024 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu05g03353 | Tsu-Chr5 | 44895528 | 44909447 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu05g03353 | K04646 | - | gmx:100786617 | 3143.98 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu03g01875 | 03 | 19369725 | 19384196 | Tsu05g03353 | 05 | 44895528 | 44909447 | ECH | |
| Tsu05g03353 | 05 | 44895528 | 44909447 | Tsu05g03353 | 05 | 44895528 | 44909447 | ECH | |
| Tsu03g01875 | 03 | 19369725 | 19384196 | Tsu05g03353 | 05 | 44895528 | 44909447 | PCT |