Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01875 ATGCTTTGTTTGTTGCACTCCTCATTTGTATACTTTAGGAATTACAAATTATTCACTTATAAGCTACATTCTTCTCTTGAAGCCCAACTCCAAGGAACAACCCAAGATCATCtacaaatatttaatattgaACTTAAAGCAAAGATGAAATCTTATCAGATGCCTGAGCAGGTAGTCTTTTGGAAATGGATTAGCCCCAAGTTGTTGGGTCTTGTGACACAGACCTCTGTATACCACTGGTCAATTGAAGGCGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCaaacaatcaaataattaattatcgATGTGACCCTACAGAAAAATGGTTGGTCTTGATTGGTATTGCTCCTGGTTCACCCGAGAGGCCACAATTGGTGAAAGGAAACATGCAACTCTTCTCTGTGGAACAACAGCGCAGCCAGGCTCTAGAAGCACATGCGGCATCATTTGCTCAATTTAAAGTTCCTGGGAATGAAAATCCTTCTACTTTGATTGCTTTTGCCACCAAGACTCTTAATGCTGGTCAAGTTATATCCAAGTTGCATGTTATTGAACTGGGTGCACAGCCAGGGAAGCCTTCATTTACAAAGAAACAAGCAGATCTGTTCTTTCCTCCTGATTTTGCTGATGATTTTCCAGTTGCCATGCAGATATCCCACAAATACAGTTTGATTTATGTGATTACCAAACTTGGTCTTCTATTTGTCTACGATTTGGAGACAGCTACTGCTGTATATAGGAACAGAATAAGTCCAGATCCTATATTTTTGACTTCAGAAGCTACATCAGTGGGAGGCTTTTATGCCATTAACAGGAGAGGCCAGGTGTTACTGGCTACTGTTAATGAGCAAACAATTGTGGATTTCGTCAGTGGTCAATTAAAAAATTTGGAGCTAGCAGTCAATCTTGCCAAGAGAGGAAACCTTCCTGGTGCTGAGAAGCTGGTAGTGGAACGTTTCCATGAACTATTTGCTCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAGTCTCCACAAGGAATCCTTCGTACACCCGATACAGTTGCTAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCCCCACTGTTGCAGTATTTTGGAACTCTTTTAACAAGAGGAAAGCTGAATGCCTTTGAATCACTGGAATTGTCACGGCTTGTTGTgaatcaaaacaagaaaaatctGTTGGAGAATTGGTTGGCAGAGGACAAGCTTGAGTGCAGTGAGGAGCTTGGAGATCTTGTAAAGACTGTGGACAACGATCTtgctttaaaaatatatatcaaagCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAAGAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGGTTGGATATACACCCGACTATCTCTTCCTTTTGCAAACGATTCTCCGGACTGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAAGGTGGTTGTCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGAGAAACCTGATCCGCGAGGCAACTGCCTTTCTCCTAGATGTTTTGAAGCCAAATCTACCTGAACATGGGTTCCTTCAAACAAAGGTGTTAGAGATAAATCTCGTGACTTTCCCTAATGTTGCTGATGCAATTTTGGCTAATGGCATGTTTAGCCATTATGACCGTCCTCGTATTGCCCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAACATTACACAGAGTTGCCAGATATAAAACGTGTCATTGTAAATACTCATGCAATTGAGCCACAGTCACTTGTTGAATTTTTTGGTACTCTATCACGAGAATGGGCTTTAGAGTGTATGAAAGATCTATTGCTGGTCAATCTTAGAGGCAACCTACAGATAATTGTGCAGGTTGCTAAAGAATATTGTGAACAACTGGGCGTTGATGCTTGCATAAAGATTTTTGAGCAATTCAGGTCATATGAAGGACTGTATTTTTTCCTTGGTTCATATTTGAGCTCCAGTGAGGATTCAGACATTCACTTTAAGTACATTGAAGCAGCAGCAAAGACTGGACAAATCAAAGAGGTCGAGCGTGTGACTAGAGAATCAAGTTTCTATGATCCTGAGAAAACAAAGAACTTTCTGATGGAAGCTAAGCTTCCAGATGCACGACCACTGATTAATGTTTGTGACCGATTTGGATTTGTTCCAGATCTAACACACTATCTATACACAAGTAACATGCTTCGCTACATTGAGGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTTGTTGGGCAGCTGCTAGATGATGAATGTCCAGAAGATTTTATCAAAGGCTTAATTCTCTCTGTTCGTTCATTACTGCCAGTGGAGCCCCTTGTGGCGGAATGTGAGAAGAGGAATCGGCTTCGTTTACTCTCTCAGTTTTTAGAACATCTTGTAAGTGAAGGAAGCCAGGATGTGCATGTTCATAATGCACTGGGGAAAATTATCATTGATAGTAACAACAACCCAGAACATTTTCTCACGACAAACCCATACTATGACTCTCGAGTTGTGGGCAAATATTGTGAAAAACGGGATCCCACTTTGGCAGTTGTGGCTTATAGGCGAGGACAATGTGATGATGAACTTATCAATGTGACAAACAAAAATTCCTTGTTCAAACTACAAGCAAGATATGTTGTTGAGAGGATGGATGCTGACCTTTGGGAGAAAGTTCTTAACCCTGATAATGCCTACAGAAGACAACTTATTGATCAAGTTGTATCTACCGCTCTTCCAGAAAGCAAGAGCCCTGAACAAGTATCAGCATCAGTTAAGGCTTTCATGACTGCTGATCTACCTCATGAATTGATTGAGCTTCTCGAGAAGATTGTGCTTCAGAATTCTGCTTTCAGCGGGAACTTTAATCTTCAGAATCTTCTTATTTTGACAGCGATAAAGGCTGATCAATCCAGAGTGATGGATTATATTAATAGACTGGATAACTTTGATGGTCCTGCAGTTGGAGAAATGGCTGTTGAGGCTCAATTATATGAGGAGGCATATGCAATTTTCAAGAAGTTCAACTTAAATGTTCAAGCAGTCAATGTCTTGCTAGATAATATTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCTAAGGCTCAACTCAGGGAAGGTCTAGTTAGTGATGCAATTGAGTCGTTTATACGAGCAGATGATGCCACACAATTTTTGGATGTCATCCATGCTGCTGAAGATGGCAATGTTTACCAGGACTTGGTGAGATACTTGCTGATGGTAAGGCAGAAAACAAAAGAACCCAAGGTGGACAGCGAGCTTATTTATGCATATGCAAAGATTGATAGGCTGAGTGACATTGAGGAGTTCATTCTCATGCCGAATGTGGCCAATCTTCAAAATGTTGGTGACAAATTGTATGATGAAGAGCTATATGAGGCTGCGAAAATTATATACTCTTTTATATCCAACTGGGCTAAATTAGCAGTCACGCTTGTGAAGTTGAAACAGTTCCAAAATGCTGTTGATGCAGCAAGGAAAGCTAACAGTGCAAAAACATGGAAAGAAGTTTGCTTTGCATGCGTTGACGAAGAGGAGTTCCGTTTGGCCCAGATATGTGGGCTGAATATTATCATTCAGGTGGATGATTTGGAAGAGGTAAGCGAGTATTACCAAAACAGAGGCTGCTTCAATGAATTAATATCTCTCATGGAGAGTGGCCTAGGATTAGAACGGGCACACATGGGCATATTCACGGAGCTGGGAGTTCTGTATGCTAGATACCGTCCAGAGAAGCTTATGGAGCATATCAAACTATTTTCAACCCGACTAAATATTCCTAAACTCATAAGAGCCTGTGATGAACAACAACATTGGAAGGAACTGACCTATTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACAACCATCATGAACCATTCGCCTGAAGCATGGGATCACATGCAATTTAAAGATGTTATTGCCAAAGTTGCTAATGTGGAGTTGTATTACAAGGCTGTTCACTTCTATTTGCAAGAGCATCCAGATCTTATCAATGATGTTCTGAATGTCCTTGCACTTCGGGTTGACCATGCGCGTGTTGTTGACATCATGCGGAAGGCTGGTCACCTCCGCCTGGTCAAGCCATACATGGTTGCAGTTCAGAGTAATAATGTATCTGCTGTTAATGAAGCCTTGAATGAGATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCGATCGATTTGCATGATAATTTTGATCAAATAGGCCTTGCACAAAAGGTTGAAAAGCACGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGTAGGTGGAAGCAGTCCATTGCCTTGTCAAAGAAGGACAACCTTTACAAGGACGCAATGGAAACAGCATCACAATCTGGTGAACGCGAACTTGCTGAGGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAGGAATGCTTTGCCTCGTGTCTGTTTGTTTGCTATGATTTGATCCGGGTAGATGTTGCTCTTGAACATGCTTGGATGCATAATATGATTGACTTTGCTTTCCCATATCTCTTACAGTTTATCCGTGAGTACACTGGCAAAGTTGATGAACTGGTGAAGCACAAAATTGAGTCACAGAACGAAGTGAAGGCTAAAGAACAAGAAGAGAAGGAAGTAATTGCACAACAGAATATGTATGCTCAATTATTGCCGCTTGCTTTGCCTGCACCACCAATGCCTGGAATGGGAGGGGGCTTTGCCCCCCCTCCGATGGGGGGCGGATTGGGGATGCCTCCAATGCCTCCTTTTGGCATGCCTATGGGCGGTAGCTACTGA 4935 0.412 MLCLLHSSFVYFRNYKLFTYKLHSSLEAQLQGTTQDHLQIFNIELKAKMKSYQMPEQVVFWKWISPKLLGLVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFSVEQQRSQALEAHAASFAQFKVPGNENPSTLIAFATKTLNAGQVISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVDFVSGQLKNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAEKREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGVDACIKIFEQFRSYEGLYFFLGSYLSSSEDSDIHFKYIEAAAKTGQIKEVERVTRESSFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVAECEKRNRLRLLSQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDADLWEKVLNPDNAYRRQLIDQVVSTALPESKSPEQVSASVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADQSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAYAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIHAAEDGNVYQDLVRYLLMVRQKTKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDKLYDEELYEAAKIIYSFISNWAKLAVTLVKLKQFQNAVDAARKANSAKTWKEVCFACVDEEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVIAKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKVEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRVDVALEHAWMHNMIDFAFPYLLQFIREYTGKVDELVKHKIESQNEVKAKEQEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPMGGGLGMPPMPPFGMPMGGSY 1644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01875 1644 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1232 1378 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 Coils Coil 1421 1441 - -
Tsu03g01875 1644 Gene3D - 1486 1582 - -
Tsu03g01875 1644 SUPERFAMILY Clathrin heavy-chain terminal domain 35 287 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Tsu03g01875 1644 Pfam Region in Clathrin and VPS 645 784 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 Pfam Region in Clathrin and VPS 1236 1375 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 Pfam Region in Clathrin and VPS 794 927 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 Pfam Region in Clathrin and VPS 501 634 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 Pfam Region in Clathrin and VPS 1091 1225 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 Pfam Region in Clathrin and VPS 937 1075 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 Pfam Region in Clathrin and VPS 1384 1523 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1086 1227 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 Gene3D - 22 321 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Tsu03g01875 1644 SMART CLH_2 1381 1540 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 SMART CLH_2 644 786 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 SMART CLH_2 495 637 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 SMART CLH_2 1086 1227 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 SMART CLH_2 1232 1378 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 SMART CLH_2 937 1082 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 SMART CLH_2 791 930 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 PIRSF CHC 25 1622 IPR016341 GO:0016192|GO:0032051|GO:0071439
Tsu03g01875 1644 SUPERFAMILY ARM repeat 401 737 IPR016024 -
Tsu03g01875 1644 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 937 1082 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 Pfam Clathrin-H-link 313 378 - -
Tsu03g01875 1644 SUPERFAMILY ARM repeat 995 1139 IPR016024 -
Tsu03g01875 1644 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1381 1524 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 PANTHER CLATHRIN HEAVY CHAIN 25 1643 - -
Tsu03g01875 1644 SUPERFAMILY ARM repeat 289 444 IPR016024 -
Tsu03g01875 1644 Pfam Clathrin, heavy-chain linker 288 311 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Tsu03g01875 1644 SUPERFAMILY ARM repeat 1140 1475 IPR016024 -
Tsu03g01875 1644 Pfam Clathrin propeller repeat 98 141 IPR022365 -
Tsu03g01875 1644 Gene3D Tetratricopeptide repeat domain 1141 1480 IPR011990 GO:0005515
Tsu03g01875 1644 Gene3D Tetratricopeptide repeat domain 847 998 IPR011990 GO:0005515
Tsu03g01875 1644 Gene3D Tetratricopeptide repeat domain 999 1140 IPR011990 GO:0005515
Tsu03g01875 1644 SUPERFAMILY ARM repeat 845 1011 IPR016024 -
Tsu03g01875 1644 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 644 786 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 PANTHER CLATHRIN HEAVY CHAIN RELATED 25 1643 - -
Tsu03g01875 1644 Coils Coil 1568 1588 - -
Tsu03g01875 1644 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 495 641 IPR000547 GO:0006886|GO:0016192
Tsu03g01875 1644 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 791 930 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01875 Tsu-Chr3 19369725 19384196 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01875 K04646 - gmx:100802224 3026.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01875 03 19369725 19384196 Tsu05g03353 05 44895528 44909447 ECH
Tsu03g01875 03 19369725 19384196 Tsu03g01875 03 19369725 19384196 ECH
Tsu03g01875 03 19369725 19384196 Tsu05g03353 05 44895528 44909447 PCT