Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03314 ATGGTTGATTTAGAATGGAAATCAAAGATGCTAAACTCAAACAACATATCACCAAAATCACCCAAACTATCCTTACCCTTACCCACTTTACATCTTCCTCTTCCACTTTCACCTAACGACATCAAAACGGCGTCGTTAGATATTTGCACCGCGTACGACAACTATCTCCGCCTCCCTCACCTAAAAACCCACTGGGCCACCGAAACATTCCCTAATTGGGCCAACGAGCCCATCATAAAGCCCGCTTTAACCGCTCTTGAAATCACTTTCCGTTTCATCACAACCATATTATCAGACCCAAGACCATACACCAACAAACGCGAATGGGCCCGTCGGGCTGAATCACTCGCAAAAGCCCAAATCCACCTCATCGCTATTCTCtccgaagaagaagaacaaaaccCAAACACACGTGGCAAAGCACCGGTATATGACGTCAGCAATATAAACAAAAACCAGTTCATATGCTACAGTGAACAAAGTCTGCTACCAAAACTCGCCACGTGGCAGCAATCAAAGCAAATAGCGCAAAGATTATTTTCCACCGTGGAATCCGAAATGATGACGTGTAGTTACACGTTAGGTTTAGGTGAACCGAATTTTAACGGTAAATCGATTCTCCGTTACGACGAAGTTTGTAAACCGAGTTTAATCCACTCCTTAGAAACGACGCCGTTTGATCATGTAGCGAACTACGAGAATCGAAATCTACACGCGACGCACCAAATTTTCGAGTCATGGACACGTGCAGCGCGTGTTTTATTAGAGCGCGTGGAAGAGGATATAGATATCAAAGCATTTGAGAAAGCAACGAGTGAGATCTACGCGGTGGAAAGAATCTGGAAGCTTCTAACAGAAATTGAAGATTTACACATGATGATGGATCCAGAAGATTTTCTAAAACTAAAGAAGAAACTAGGAATGCGATCATGTAACGAAACGGTACCGTTTTGTTTCAGATCAACAGAGTTAGTTACGATAACGAAGATGTGTAGAGATCTGAGACAAAAAGTACCGGAGATTTTGGAAGTTGAAGTGGACCCCACCGGTGGTCCCGGAGTAATGGAAGAAGCGATGAAGGTTTATTCGGAGAAGATGAATGGGTTCGAGAAAGTTCATTTGTTGCAAGCGATGCAAGGGATTGAATCGGCgatgaagagatttttttaTGCGTATAAACAGGTTTTGATAGTTATGATGGGAAGTTCTGAGATGAATTTGGAATCGTTGAATCGAATTTTTCTTGAACCGACTTGTTTTCCTAGCTTGGATGCTGCCAAGACTTTTCTTGGGTATTTTTGGGAAAATTACGAAAATAGTACTATTAGTTGGTAA 1335 0.4127 MVDLEWKSKMLNSNNISPKSPKLSLPLPTLHLPLPLSPNDIKTASLDICTAYDNYLRLPHLKTHWATETFPNWANEPIIKPALTALEITFRFITTILSDPRPYTNKREWARRAESLAKAQIHLIAILSEEEEQNPNTRGKAPVYDVSNINKNQFICYSEQSLLPKLATWQQSKQIAQRLFSTVESEMMTCSYTLGLGEPNFNGKSILRYDEVCKPSLIHSLETTPFDHVANYENRNLHATHQIFESWTRAARVLLERVEEDIDIKAFEKATSEIYAVERIWKLLTEIEDLHMMMDPEDFLKLKKKLGMRSCNETVPFCFRSTELVTITKMCRDLRQKVPEILEVEVDPTGGPGVMEEAMKVYSEKMNGFEKVHLLQAMQGIESAMKRFFYAYKQVLIVMMGSSEMNLESLNRIFLEPTCFPSLDAAKTFLGYFWENYENSTISW 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03314 444 Pfam Hs1pro-1 protein C-terminus 187 436 IPR009743 -
Tsu05g03314 444 Gene3D - 231 340 - -
Tsu05g03314 444 PANTHER NEMATODE RESISTANCE PROTEIN-LIKE HSPRO1 1 444 IPR038759 -
Tsu05g03314 444 PANTHER NEMATODE RESISTANCE HSPRO2-LIKE PROTEIN 1 444 - -
Tsu05g03314 444 Pfam Hs1pro-1 N-terminus 1 184 IPR009869 GO:0006952
Tsu05g03314 444 SUPERFAMILY Indolic compounds 2,3-dioxygenase-like 209 430 IPR037217 GO:0019441|GO:0020037|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03314 Tsu-Chr5 44452902 44455044 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03314 - - gmx:100778560 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03314 05 44452902 44455044 Tsu05g03314 05 44452902 44455044 ECH
Tsu03g01829 03 18855009 18857523 Tsu05g03314 05 44452902 44455044 PCT