Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03286 ATGGAAGAAAAGGACACGTGTACAATCGGCATCGGAAGAATGAGTGCAAGATTAACCGACGTAGTTCTCGACTGTGTTATGCCGTACATCCACGACGCAAAAGACAGAGACGCGGTGTCGCAAGTCTGTAAACGATGGTACGAGATCGATTCATCAACTCGAAAGCATGTGACGATTGCTTTGTGTTATACAACGACGCCGGATAGACTCCGGCGACGGTTTCCTCATCTTGAATCGttgaaattgaaaggaaaaCCTAGAGCGGCGATGTTTAATTTGATACCGGAAAATTGGGGAGGGTTTGTTACTCCTTGGGttagagaaattgaaaagtattttgattgtttgaaaTCGTTACACTTTCGAAGAATGATTGTTACTGATGATGATCTTTCGATTCTTGCTCGGTCTCGTCATCAAAGTCTTCATGCTCTTAAGCTTGAAAAGTGTTCTGGATTTTCTACTGATGGACTTTACACTATTTGTCACACTTGCAAGAATTTAAGAGTCTTGTTTATGGAGGAAAGCTCAGTTCTTGAGAATAATGGTGAATGGCTTTATGAGCTTGCTTTGAATAATACCGTTCTCGAGACACTGAATTTTTACTTGACTGATATTAACAATATCAGAATTCAGGACCTTGAACTTATAGCGAAAAACTGCCCCAACTTGGTCTCTGTTAAAATTACTGATTGCGAAATCTTGAATCTGGTGAACTTCTTTCGATATGCATCTTCTCTAGAAGAATTTTGTGGAGGTTCCTACAATGAAGATCCAGAAAAGTACGCTGCTATATCATTACCAGCAAAGTTAAATCGATTGGGTTTGACATATATTGGGAAGAATGAAATGCCAATTGCGTTCCCTTATGCAGCCCAATTGAAAAAGTTGGACCTTCTCTATGCAATGCTGGATACGGAGGATCATTGTACATTAATCGAGAAATGCCCCAACTTGGAAATCCTTGAGTCAAGGAATGTAATTGGAGACAGAGGATTAGAAGTACTTGCTCGCTGTTGTAAGAAGCTGAGAAGGCTAAGAATCGAAAGAGGTGATGATGATCAAGGAATGGAAGATGAAGAAGGCGTTGTTTCCCAAAGAGGACTAATTGCCTTATCACAGGGCTGTCCAGAACTTGAATACATGGCTGTTTATGTATCCGATATCACAAATGCATCTCTAGAACACATTGGTACTCACTTGAAAAACCTCTGCGATTTTCGCCTCGTCTTGCTAGACCGAGAGGAGAGGATAACTGATTTGCCACTTGACAACGGTGTGAGGGCTTTACTGAGAGGTTGTGAAAAGCTTAGAAGATTTGCTCTATATCTCAGACCTGGAGGCTTAACCGATGTAGGCTTAGGTTACATAGGACAATACAGTCCAAACGTGAGATGGATACTTCTCGGTTATGTCGGCGAAACTGATGCAGGGCTCTTGGAATTCTCCAAAGGTTGTCCAAGTCTTCAAAAACTTGAAATGCGAGGGTGTTCATTTTTCAGTGAATATGCATTAGCTGTTGCTGCAACTAGATTAAAATCTTTGAGGTATCTTTGGGTACAAGGGTATGGAGCATCATCTTCTGGGCGCGATCTTTTGGCAATGGCGCGACCATATTGGAATATTGAGGTGATTCCTTCTAGACGCGTAGTCGTTAACAATCAACAAGATGAGTCTGTTGTTATGGAGATGGAGCATCCAGCCCATATTCTTGCTTATTACTCCCTTGCTGGACCAAGATCAGATTTTCCCGATACTGTTATACCTTTGGATCCTGCTGCATCATATGTTAACACCTAA 1800 0.4072 MEEKDTCTIGIGRMSARLTDVVLDCVMPYIHDAKDRDAVSQVCKRWYEIDSSTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPENWGGFVTPWVREIEKYFDCLKSLHFRRMIVTDDDLSILARSRHQSLHALKLEKCSGFSTDGLYTICHTCKNLRVLFMEESSVLENNGEWLYELALNNTVLETLNFYLTDINNIRIQDLELIAKNCPNLVSVKITDCEILNLVNFFRYASSLEEFCGGSYNEDPEKYAAISLPAKLNRLGLTYIGKNEMPIAFPYAAQLKKLDLLYAMLDTEDHCTLIEKCPNLEILESRNVIGDRGLEVLARCCKKLRRLRIERGDDDQGMEDEEGVVSQRGLIALSQGCPELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREERITDLPLDNGVRALLRGCEKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWILLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATRLKSLRYLWVQGYGASSSGRDLLAMARPYWNIEVIPSRRVVVNNQQDESVVMEMEHPAHILAYYSLAGPRSDFPDTVIPLDPAASYVNT 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03286 599 Gene3D Ribonuclease Inhibitor 55 594 IPR032675 -
Tsu05g03286 599 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 15 593 - -
Tsu05g03286 599 SUPERFAMILY RNI-like 93 349 - -
Tsu05g03286 599 SUPERFAMILY RNI-like 283 534 - -
Tsu05g03286 599 SMART LRR_CC_2 376 400 IPR006553 -
Tsu05g03286 599 SMART LRR_CC_2 139 164 IPR006553 -
Tsu05g03286 599 SMART LRR_CC_2 486 511 IPR006553 -
Tsu05g03286 599 SMART LRR_CC_2 316 339 IPR006553 -
Tsu05g03286 599 SMART LRR_CC_2 434 460 IPR006553 -
Tsu05g03286 599 Pfam Transport inhibitor response 1 protein domain 75 121 IPR041101 -
Tsu05g03286 599 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 15 593 - -
Tsu05g03286 599 Gene3D - 10 54 - -
Tsu05g03286 599 Pfam F-box 17 56 IPR041567 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03286 Tsu-Chr5 44202035 44206623 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03286 K13463 - gmx:100793081 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03286 05 44202035 44206623 Tsu05g03286 05 44202035 44206623 ECH
Tsu03g01799 03 18525337 18528342 Tsu05g03286 05 44202035 44206623 PCT