Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03265 atggaaACTTTATGCAACAAGGGTGgtaattttcaaaagaaaaaaaatgggtCTTGTAGTTCTACTGGTTCATGTTCTTCAGATTTGACTGAACAAGCAAAAACAGTTAAAGGGTTTTCATCATCTCTTCCTATTAGGAAGACTATTGTTTCCAAATGCAGCAAATcagatgaaaaagaaaatgaaccTGTTTCTCAAGTAGAAGATAAAAAAGTACTTACTAATACTAGTATCATCAGTTCAAAAATTTCTGGATCAGGAGTTGATATGATGAAGGAGAGGTTTGCGAAATTGCTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGAGTTAGCACTGCTATGGCTATCTCAAATGCTATTACTAATTTGTGTGGGACTGTATTTGGGCAATTATGGAGACTAGAACCTGTACCTtgtgaaaagaaagaaaagtggCAAAGAGAAATGGATTGGCTTCTTTGTGTTGGTGATCATATTGTTGAGTTAATGCCTTCTTGGCAAACATTTCCAGATGGTAGTAAGCTAGAGGTAATGACTTGCAGACCAAGATCAGATATTTTTATCAATCTTCCAGCTCTGCGTAAACTCGACAACATGCTTCTGGAAATATTAGATAGTTGCACATCTATGGAGTTTTGGTATGTTGACCAAGGAATTGTGGCACCAGATGCAGATGGAACAGCTTCTTTCCGGAAAAGAAATCAGCGACAAGAGGAGAAATGGTGGCTCCCTGTACCTCGTGTTCCCCCTTCCGGTCTCAGTGAGAGTTCAAGAAAGAAGTTGACTCACACACGCGAATGCGCTAGCCAAATACTTAAAGCAGCCATGTCTATCAACAGCATTGCTTTAGGTGATATGGAAGTTCCAGAGTCCTATTTGGAGTCACTTCCTAAGAATGGAAGAACttgcttgggtgattttatcTATCGATACATCACATCGGACCAATTCTCTCAAGAATGCTTGCTTGACTGCATAGACCTCTCCAATGAACATGTTGCACTAGAGATCGCTAATCGTTTGGAAGCTGCGATATATGTATGGCGCCGAAGGTCTCACTCAAGACCTCCACTTTATCCTATCCGTTCGACTACTAAGTCATCGTGGGAGATTGTGAAGGACTTCATGGTTGATGGAGATAAGAGAGATTTGCTTGCAGAGAGAGCTGAAAGTATTCTACTTTCACTTAAGCAGCGTTTTCCGGGTTTAAGTCAAACTACATTGGATACCAGCAAGATCCAGTACAACAAGGATGTTGGAAAATCAATACTAGAAAGCTATTCAAGAGTGTTGGAGAGTATGGCATTTAACATCGTAGCTCGTATAGACGATTTactatatgttgatgacataaCCAAACATTCAGATAGGTTTCCATTAGCTCCAATGGTTAACATGGTTTCACAAAAGAAAGTTTCACAACAATCACTGGTGTCTGTCTCAGACACTCAACACAACAAAACAACATTTGGTACACCAAGTTGTTCACCTGCTGTGCCATTAATTAGTCCTGCTAAGGTTGAGATAACTCCTTTTATTCGCGACATGATTAAACCTCAGCGCCGCGGTTTCGGTGTGAAGAGAGTGTTGTCAAATTATCTTGGAGGAGAAATTAAAGCAACAAAGGTATTTAGTAACTTAGCTCATGAGGTGAATGGTTCAAATACAAGTTGcaacaaaatagaaaaacaaggAAGTCAGAAAGAATCATGTGCCATGAAGAGCAAGACAAAATGA 1740 0.3724 METLCNKGGNFQKKKNGSCSSTGSCSSDLTEQAKTVKGFSSSLPIRKTIVSKCSKSDEKENEPVSQVEDKKVLTNTSIISSKISGSGVDMMKERFAKLLLGEDMSGSGKGVSTAMAISNAITNLCGTVFGQLWRLEPVPCEKKEKWQREMDWLLCVGDHIVELMPSWQTFPDGSKLEVMTCRPRSDIFINLPALRKLDNMLLEILDSCTSMEFWYVDQGIVAPDADGTASFRKRNQRQEEKWWLPVPRVPPSGLSESSRKKLTHTRECASQILKAAMSINSIALGDMEVPESYLESLPKNGRTCLGDFIYRYITSDQFSQECLLDCIDLSNEHVALEIANRLEAAIYVWRRRSHSRPPLYPIRSTTKSSWEIVKDFMVDGDKRDLLAERAESILLSLKQRFPGLSQTTLDTSKIQYNKDVGKSILESYSRVLESMAFNIVARIDDLLYVDDITKHSDRFPLAPMVNMVSQKKVSQQSLVSVSDTQHNKTTFGTPSCSPAVPLISPAKVEITPFIRDMIKPQRRGFGVKRVLSNYLGGEIKATKVFSNLAHEVNGSNTSCNKIEKQGSQKESCAMKSKTK 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03265 579 ProSiteProfiles PRONE domain profile. 78 460 IPR005512 GO:0005085
Tsu05g03265 579 MobiDBLite consensus disorder prediction 560 579 - -
Tsu05g03265 579 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5 17 551 - -
Tsu05g03265 579 MobiDBLite consensus disorder prediction 1 27 - -
Tsu05g03265 579 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 88 454 IPR005512 GO:0005085
Tsu05g03265 579 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 17 551 IPR038937 GO:0005085
Tsu05g03265 579 Gene3D PRONE domain, subdomain 1 80 321 - -
Tsu05g03265 579 Gene3D PRONE domain, subdomain 1 322 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03265 Tsu-Chr5 43947423 43952402 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03265 - - gmx:100814278 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01761 03 18016372 18019681 Tsu05g03265 05 43947423 43952402 ECH
Tsu05g03265 05 43947423 43952402 Tsu05g03265 05 43947423 43952402 ECH
Tsu03g01761 03 18016372 18019681 Tsu05g03265 05 43947423 43952402 PCT