Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03231 ATGGCTTCATCAGTCTCTGTTGTTGGATCTATCTGTAAAACTCCATTGAGCTTGAATAGCTCTGGAACAGTAGCTTCAGTTCCAAGTTCATCATTCCTTGGAACCAGCTTAAAGAAAATTACCTCAAGGACTCCAAATACAAAGGTTTCATCTGGAAGTTTCAAAGTTGTTGCTGCTGAGATTGATGAGAGCAAACAAACTGACAAAGACAGATGGAGAGGTTTAGCCTATGATATTTCAGATGATCAACAAGATATCACAAGAGGGAAGGGTATGGTTGATTCAGTTTTCCAAGCACCACAAGATGCTGGAACTCATTATGCAGTCATGAGTTCTTATGAGTACATTAGTGCTGGACTTAGACAGTACAACTTTGACAATACAATGGATGGTTTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAATTTCTTGACCCTGCCTAACATCAAGgttCCTCTCATTCTTGGTATTTGGGGAGGTAAAGGTCAAGGAAAATCTTTCCAAGCCGAGCTTGTCTTTGCCAAGATGGGAATCAACCCAATCATGATGAGTGCTGGAGAGCTAGAAAGTGGAAATGCAGGGGAACCTGCAAAACTAATTCGACAAAGATATCGAGAAGCAGCAGACATAATAAGAAAAGGGAAAATGTGCTGTCTATTCATAAACGATCTTGATGCAGGAGCCGGTCGATTAGGTGGAACAACACAGTACACTGTAAATAACCAAATGGTAAATGCAACACTTATGAACATTGCTGATAATCCAACAAATGTTCAACTACCTGGTATGTATAACAAAGAAGAGAATCCGCGTGTTCCTATCATCGTTACTGGTAACGATTTTTCAACATTGTATGCTCCTCTTATTCGTGATGGTCGTATGGAGAAATTTTATTGGGCACCTACAAGAGAAGATCGAATTGGTGTTTGTAAAGGGATTTTTAGACATGATAGTGTACCTGATGAGGATATTGTTAAGATTGTTGATACTTTCCCTGGTCAATCCATTGATTTCTTTGGTGCACTAAGGGCAAGAGTATATGATGATGAAGTGAGAAAGTGGATTTCTAGTGTTGGTATTGAAACTATTGGGAAGAAGCTTGTGAACTCAAAAGAAGGACCtccaacttttgatcaacccaAGATGACTTTGGAGAAACTTTTGGAGTATGGTAACATGCTTGTACAAGAACAAGAGAATGTGAAGAGAGTTCAATTGGCTGATAAATACTTGAGTGAAGCTGCTCTTGGTGATGCCAATAGTGATGCTATCAAGAGTGGAACTTTCTATGGAATATTACTGCTATTGGTGATGCTAATAGTGATGCTATCAAGAGTGAAACTGGAAAGGCAGCTCAACAAATAA 1386 0.386 MASSVSVVGSICKTPLSLNSSGTVASVPSSSFLGTSLKKITSRTPNTKVSSGSFKVVAAEIDESKQTDKDRWRGLAYDISDDQQDITRGKGMVDSVFQAPQDAGTHYAVMSSYEYISAGLRQYNFDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRHDSVPDEDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWISSVGIETIGKKLVNSKEGPPTFDQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAIKSGTFYGILLLLVMLIVMLSRVKLERQLNK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03231 461 Gene3D - 124 308 IPR027417 -
Tsu05g03231 461 Gene3D - 309 421 - -
Tsu05g03231 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 348 IPR027417 -
Tsu05g03231 461 Pfam ATPase family associated with various cellular activities (AAA) 164 305 IPR003959 GO:0005524|GO:0016887
Tsu05g03231 461 PANTHER - 1 440 IPR044960 -
Tsu05g03231 461 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03231 Tsu-Chr5 43551018 43555929 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03231 - - vvi:100263871 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01718 03 17538209 17545961 Tsu05g03231 05 43551018 43555929 ECH
Tsu05g03231 05 43551018 43555929 Tsu05g03231 05 43551018 43555929 ECH