Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01718 atgattgatgagttaaaaTCAATTGAGAAGAATAAGACATGGGACATGTGCAAGCTACCTTCAGATAAAAGggcaattgatgtgaaatgggtgtataagcTGAAGCAAAATCCTGAAGGGCAAGTGATCAAGCATAAGGCAAGGCTTGTAGCCAAAGGATTTCTGCAAAAGCAGGGATTAGACTATGATGAGGTCTTCTCACCTGTGGCTAGACATGAGACTATAAGGTTAGTGATAGCACTAGCTTGTAGCAGAAGAGGGCCTATGTTCCACTTAGATGTGAAGTCAGCTtttctaaatggtccattgAAGGAAGATGTATATGTGAAACAACCACCTGGCTTTGAGTTGAAAGGAGAGGAAGATATGGTGTTGAAACTGAACAAAGTTTTGTATGGCTTGAAGCAAGCCCCAAGAGCatggaacaagagaattgacCAATTCCTTGTTATGCAAGGTTTTGTGAAATGTAGTGTTGAATATGGTGTTTATGTGAAACACAGTGATGACAAGAATATGTTaatcatatgtttgtatgttgatgatatattAGTAACTGGAATGGAGCTCTTGGCAACTCCAAAAGGAATGATATTGCATCAAGCAAAATATGCTACtgagattttgaagaagtttgaaatgCTTGATTGCAATTCATCAGTGATACCTGCAAACACAAGGCTGAAGCTGGAAGTAGATGGAAGTAGTGAGACTGTGGAATCTACTATGGTCAGTCAATTGATAGGTTCCCTAAGATACTTGTGTCAAACTAGGCCTGACATTAGCTATGCAGTTGGCTATGTTAGTAGATTTATGAGCAAGCCACTGAAACCTCACCTCTTagcagcaaagaggatactcagatacatcaatgACACAATACACTATGGTGTGTTATTTCCATATTCAAGGGATAGCTCCAAACTGGAATTGAATGGATTTTCTGATGCTGACTGGTGTGGAGACAAGGTAGACAGGAGGAGCACAAGTGGCTATGTGTTTAAGTTCCAAAATGCACCAGtttcatggtgttctaagaagcaatcagtgattgctCTGTCTAGCTGTGAAGCAGAGTATGTTGCAGGCTCTCTAGCTGCTTGTCAAGCTAATTGGCTGCAATCATTGCTCAGTGAAATGAAGATCATTGACAACATCACAATAAtgctgaagattgacaacaaatcagcaATTAACTTGGCAAAGAATCCTGTTAGCCATGGTAAAAGTAAGCACATTGAAACAAGTATCAATCAGAGCTTATCCATGGCTGCCTCAGTTTCTACTGTAGGAGCTGTCAAAACTATGAGCTTGAATGGCTCAGTAGTAGCAGGACCATCAGTTTCCAATTCAGCTTTCTTCGGCACAAGCATGAAGAAGACTACCTCAAGAATTCCAAACTCGAAGGTTTCCTCTGGAAGCTTCAAAGTTTATGCCGCTAAAGAGATTGATGAATCGAAACAGACAGACAAGGACAGATGGAGAGGTTTGGCCTATGATATCTCAGATGATCAACAAGATATCACAAGAGGGAAGGGTTTGGTTGATTCAGTTTTCCAAGCACCAGAAGATACTGGAACTCATTATGCAGTCATGAGTTCTTATGAGTACATTAGTACTGGACTTAAAACGTACAACTTTGACAACACTATGGATGGTTTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAATTTCTTGACCTTGCCTAACATCAAGGTTCCTCTCATTCTTGGTGTCTGGGGAGGAAAAGGACAGGGAAAATCTTTCCAAGCTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGCTTGAAAGTGGAAATGCAGGAGAGCCAGCAAAATTGATCAGACAGAGATACCGTGAAGCTTCCGACATTATCAGGAAGGGAAAGATGTGTTGTCTGTTCATCAACGATCTTGATGCAGGAGCAGGTCGTATGGGTGGAACCACTCAATACACTGTCAACAACCAGATGGTGAATGCAACACTCATGAACATTGCTGATGCCCCAACAAATGTCCAACTCCCTGGTATGTACAACAAGGAAGACAACGCTCGTGTTCCCATCATTGTCACTGGTAACGATTTCTCAACCCTCTATGCTCCTCTCATTCGTGATGGACGTATGGAGAAGTTCTACTGGGCTCCTACAAGGGATGACCGTATTGGTGTCTGCACTGGAATTTTCCGTCATGACAACATCCCAAAAGACGACATTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCCATCGATTTCTTCGGTGCATTGAGGGCTAGAGTGTATGATGATGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGAAACCATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCACCCGTCTTCGATCAACCATCGATGACACTAGAAAAGCTGTTGGAGTATGGTAACATGCTTGTCCAAGAACAAGATAATGTGAAGAGAGTCCAATTGGCTGACAAGCCTTTGTTGAAGGTATGA 2532 0.3882 MIDELKSIEKNKTWDMCKLPSDKRAIDVKWVYKLKQNPEGQVIKHKARLVAKGFLQKQGLDYDEVFSPVARHETIRLVIALACSRRGPMFHLDVKSAFLNGPLKEDVYVKQPPGFELKGEEDMVLKLNKVLYGLKQAPRAWNKRIDQFLVMQGFVKCSVEYGVYVKHSDDKNMLIICLYVDDILVTGMELLATPKGMILHQAKYATEILKKFEMLDCNSSVIPANTRLKLEVDGSSETVESTMVSQLIGSLRYLCQTRPDISYAVGYVSRFMSKPLKPHLLAAKRILRYINDTIHYGVLFPYSRDSSKLELNGFSDADWCGDKVDRRSTSGYVFKFQNAPVSWCSKKQSVIALSSCEAEYVAGSLAACQANWLQSLLSEMKIIDNITIMLKIDNKSAINLAKNPVSHGKSKHIETSINQSLSMAASVSTVGAVKTMSLNGSVVAGPSVSNSAFFGTSMKKTTSRIPNSKVSSGSFKVYAAKEIDESKQTDKDRWRGLAYDISDDQQDITRGKGLVDSVFQAPEDTGTHYAVMSSYEYISTGLKTYNFDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFRHDNIPKDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVETIGKKLVNSKEGPPVFDQPSMTLEKLLEYGNMLVQEQDNVKRVQLADKPLLKV 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01718 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 551 754 IPR027417 -
Tsu03g01718 843 SUPERFAMILY DNA/RNA polymerases 10 415 IPR043502 -
Tsu03g01718 843 PANTHER - 423 840 IPR044960 -
Tsu03g01718 843 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 423 840 - -
Tsu03g01718 843 Gene3D - 731 838 - -
Tsu03g01718 843 CDD RNase_HI_RT_Ty1 313 415 - -
Tsu03g01718 843 Gene3D - 546 730 IPR027417 -
Tsu03g01718 843 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 11 189 IPR013103 -
Tsu03g01718 843 Pfam ATPase family associated with various cellular activities (AAA) 586 727 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01718 Tsu-Chr3 17538209 17545961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01718 1 415 Receptor kinase-like Gene Family AT4G23160 34.298 1.04e-79 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01718 - - gmx:100806240 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01718 03 17538209 17545961 Tsu05g03231 05 43551018 43555929 ECH
Tsu03g01718 03 17538209 17545961 Tsu03g01718 03 17538209 17545961 ECH