Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g03215 ATGGCTCACTGCTATACTAAGGATACCGGTATAGAGGTATCCCAATTGATTTGGTGGTATGTCGTTTCATCTTACGAAGAACTTAAAGCGGGGAGACACAAAGTGAAAACCTCGGCTGATAGTTTTAGTTGTCCGTACTGCCCCGAGAAGAAACATGATTATAAGTACATCGAACTCTTTAATCATGCCACCGGAATTGGTAGGAGTAGTTCGGATAAGAGAAGTGCTAAAGAGAAGGGCAGTCATCTGGCTTTGGTAAATTATTTGGAACAAGATCTTAGGAGCAAGGACGGTGCATCGAAACCTGTAGATCAAGGTACAAACACAATAACTCCAGGACAAACTGTAATGTCTCACTGTGCTTTCAAGGATACCGATATAAATTGGTGGTATGTAGATTCAGCTTATGAAGAGCTCACAAATGGAACTCGCAATGTGAGAACTCCAAACGACGCTTTCATCTGTCCGTACTGCCCAAACAGAAAACAAGATTATGCATACAGGGAACTCCTAGAACATGCTTTTATGGTCGGTCGGAGTAGTTCAGATAAGAGAAGTGCTAGAGAGAGGGCTAATCATCTCGCTTTGTTGAAATATTTGGAAAAGGACATTACGAGTATGCCTGGACCGTCAAAACCTGTTGATAAAGGAACAAAATTGATAAGCCAAGGGCCGACTGTCGTGGCTCAATGCTCTAACAACAATACCGATTCAAGTGGATCTCGAACAAGTTGGTTGTATGTAGATAGATTTTATAAAGAACTCAAAAATGGAAGTCTCAAAGTGAGAATCTCAGATGATAGTTTCACTTGTCCATACTGCCCGAAAATGAAAAAACCGGACTATGTGTACCGGGAAATCCTTGAACATGCTTCTGGTGTCGGTCAGAGTACTTCGCAAAAGAGAAGTCATAAAGAGAAGGCAACTCATCTTGCTTTAATGAAATATCTCAAAGAGGATATTATCATAAATGTGGCGGCTCCATCAAAACCTGCAAATGAAGGTAGCATAGTACAAAGGCGAGAAGAAAATGTGACAACTGGCAACGCTGACAAAGATTCTGATAAAAGTGCATCTCAAATAGACGCGTCGCAAGTAAAAAAAGCATATGAACAACTCAAAAAGGGGAGTCACACTGTGCAAACCTCAGCTGATACTTTCATTTGTCCATACTGTCCTAGTAGAAAGAGGAAACGGGATTACGTGTACAGGGAAATCATTGAACATGCTTCTGGGGTGGGATGGAGTATCTCACAAACTAGAAGTGCCATTGAAAAGGCGAATCATCTGGCTTTGGTCAAATATTTGCAAAGGGATCTTATAAATGTTGGCGGTTCGAATGGAGGCACCATAGCGTCGAACCGGTCTGAGAAGGATACTAATAAAAGGGCATCTCAAATAGATGTGTTGTTCGTAAAGAAATCCTATGAAGAACTCAAAAAGGGAACTCGCAAGGTCAAAACGTCAGCAGATACTTTCTCATGTCCATATTGCCCTAAGAGAAAATACAATTATAGGTACAGCGAACTCCTTAATCATGCTTTAGGGGTCGGTCAGAGTGACTCGGAAAAGAGAAGTGTATTGGAAAAGGCCAATCACCTAGCTTTAGTGaaatatttggaaaagaatcttATGATTGTGAATGTGGAACATCCAAAACCTGCAAATAGATATGTGGAAAATAATCATATGAATGTGGAACAACATCCACCGAAACTGTTAAATGAAGGGATTCTTGTCAATTCCGAAAAGCATTTCGTGTGGCCGTGGACTGGGATTGTGATTAACATTCCTACGTTACAGACAGAAGATGGACGATGTTTTGGTGAAAGTGGTTCCAAGCTAAGGGATGAATATCGAAGCAGGGGTTTTAATCTACGTCGAGTCCGTACACTTTGGAATGACTTTGGTCATACTGGAGCCGCAGTTGTGGAATTCGATAAAAGTTGGCTAGGGTTATATAATGCAGTTGCATTTGAAAGGGCGTATGAATCAGATCATCATGGGAAAAAGGACTGGCTTTCTTTTACCGAACAAAAGTCCGGTCTTTATGCATGGATTGCTCGAGCTGATGACTACTACATGAACAACATAATCGGGGAACAACTACAGAAGATGGGAGATGTCAAAACAATATCTGAAATCATGGAATCAGAAGCTAGAAGGTTCAATATACTTGTTCAGAATATGCATAACAATCTTCAGGTAAAGAACAACAAGATAAAAGAAATGGAAGTAGTATGCAATGAAATTACACTTCGCATGGACATTGTGATGCGCGAAATGGACAGTCTCACTCTATCACACAGTCAAGAGTTGAAGAAGATACAGTCAAGTGCAACTCAACACTTTCAGAGTATTTTGAATGGTCATGAAAGGCTTAAGTTGCAACTGGAATCTCAGAAAACACAGATTGAGTTGCGAAGAATGGAACTGGAAAAACGTGAGGCGCATAAtgaaagtgaaagaaaaaagttGGAAGAAGAGATGAACATGACTGCAACGAAAGACCGCTTTCTTCAAATGGCTGCTCTGGAGCAGCAGAAAGCCGGTGAAAATGTTTTGAAACTGGCTGCAGATCAAAAGAGGCAAAAAGAACAATTCCATGCTAAAATCATCCAGCTTGAGAAACAACTAAATGTGAAACAAAAACTGGAATTGGAGATTCAGCAATTAAAAGGAAAACTAAATGTCATGAAGCACATGGAAGACGAAGGAGATTTTGATGTTCTGGATATGATGGATGCTTTACATTTGGATttaagagagaaagaacagTCACTTCGAGACATGGATGCGTTGAACCAAACGCTGATCATTAAAGAGCGCAAGAGCAATGATGAACTGCAGGAAGCTCGAAAGGAATTGATTACtTGCATTAAGGAGATACCTAATCGTGCTGAAATTGGTGTGAAGAGAATGGGGGAGCTAGATAGTAGACCATTCCTAGAAGctatgaagaaaaaatataatgcGGATGATGCAGAAGATCGAGCTTCTGAATTGTGTTCATTATGGGAAGAGTATCTGAAGGACCCTGACTGGCATCCATTTAAAATTGCTACAATTCAAGGGAAACATCAGGAAGAtatagatgatgaagatgaaaagCTGAAAGGACTGAAAAGCGAGATGGGCGAAGAAGTCTACAAAGCTGTGGTGACAGCATTGAAAGAGATAAATGAATATAATCCAAGTGGTCGGTACATAACCTTGGAATTATGGAATTATGCAGAGGGAAATAGAGCGACTTTGCAAGAAGGAGTGCGAGTTTTATTGAAGCAATGGAAATTACATAGAGAAAAAAGGGGAATGTTATGA 3321 0.3942 MAHCYTKDTGIEVSQLIWWYVVSSYEELKAGRHKVKTSADSFSCPYCPEKKHDYKYIELFNHATGIGRSSSDKRSAKEKGSHLALVNYLEQDLRSKDGASKPVDQGTNTITPGQTVMSHCAFKDTDINWWYVDSAYEELTNGTRNVRTPNDAFICPYCPNRKQDYAYRELLEHAFMVGRSSSDKRSARERANHLALLKYLEKDITSMPGPSKPVDKGTKLISQGPTVVAQCSNNNTDSSGSRTSWLYVDRFYKELKNGSLKVRISDDSFTCPYCPKMKKPDYVYREILEHASGVGQSTSQKRSHKEKATHLALMKYLKEDIIINVAAPSKPANEGSIVQRREENVTTGNADKDSDKSASQIDASQVKKAYEQLKKGSHTVQTSADTFICPYCPSRKRKRDYVYREIIEHASGVGWSISQTRSAIEKANHLALVKYLQRDLINVGGSNGGTIASNRSEKDTNKRASQIDVLFVKKSYEELKKGTRKVKTSADTFSCPYCPKRKYNYRYSELLNHALGVGQSDSEKRSVLEKANHLALVKYLEKNLMIVNVEHPKPANRYVENNHMNVEQHPPKLLNEGILVNSEKHFVWPWTGIVINIPTLQTEDGRCFGESGSKLRDEYRSRGFNLRRVRTLWNDFGHTGAAVVEFDKSWLGLYNAVAFERAYESDHHGKKDWLSFTEQKSGLYAWIARADDYYMNNIIGEQLQKMGDVKTISEIMESEARRFNILVQNMHNNLQVKNNKIKEMEVVCNEITLRMDIVMREMDSLTLSHSQELKKIQSSATQHFQSILNGHERLKLQLESQKTQIELRRMELEKREAHNESERKKLEEEMNMTATKDRFLQMAALEQQKAGENVLKLAADQKRQKEQFHAKIIQLEKQLNVKQKLELEIQQLKGKLNVMKHMEDEGDFDVLDMMDALHLDLREKEQSLRDMDALNQTLIIKERKSNDELQEARKELITCIKEIPNRAEIGVKRMGELDSRPFLEAMKKKYNADDAEDRASELCSLWEEYLKDPDWHPFKIATIQGKHQEDIDDEDEKLKGLKSEMGEEVYKAVVTALKEINEYNPSGRYITLELWNYAEGNRATLQEGVRVLLKQWKLHREKRGML 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g03215 1106 PANTHER RIBONUCLEASE P SUBUNIT P38 229 276 IPR045177 GO:0080188
Tsu05g03215 1106 PANTHER RIBONUCLEASE P SUBUNIT P38 278 335 IPR045177 GO:0080188
Tsu05g03215 1106 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 117 161 - -
Tsu05g03215 1106 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 278 335 - -
Tsu05g03215 1106 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 396 445 - -
Tsu05g03215 1106 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 107 - -
Tsu05g03215 1106 Pfam XS domain 583 694 IPR005380 GO:0031047
Tsu05g03215 1106 Gene3D XS domain 580 749 IPR038588 -
Tsu05g03215 1106 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 51 - -
Tsu05g03215 1106 Coils Coil 935 955 - -
Tsu05g03215 1106 Coils Coil 858 902 - -
Tsu05g03215 1106 Coils Coil 793 829 - -
Tsu05g03215 1106 PANTHER RIBONUCLEASE P SUBUNIT P38 161 219 IPR045177 GO:0080188
Tsu05g03215 1106 PANTHER RIBONUCLEASE P SUBUNIT P38 396 445 IPR045177 GO:0080188
Tsu05g03215 1106 PANTHER RIBONUCLEASE P SUBUNIT P38 117 161 IPR045177 GO:0080188
Tsu05g03215 1106 PANTHER RIBONUCLEASE P SUBUNIT P38 456 502 IPR045177 GO:0080188
Tsu05g03215 1106 PANTHER RIBONUCLEASE P SUBUNIT P38 50 107 IPR045177 GO:0080188
Tsu05g03215 1106 PANTHER RIBONUCLEASE P SUBUNIT P38 500 1105 IPR045177 GO:0080188
Tsu05g03215 1106 Coils Coil 727 747 - -
Tsu05g03215 1106 Pfam XS zinc finger domain 389 433 IPR005381 GO:0031047
Tsu05g03215 1106 Pfam XS zinc finger domain 495 537 IPR005381 GO:0031047
Tsu05g03215 1106 Pfam XS zinc finger domain 155 196 IPR005381 GO:0031047
Tsu05g03215 1106 Pfam XS zinc finger domain 44 86 IPR005381 GO:0031047
Tsu05g03215 1106 Pfam XS zinc finger domain 271 313 IPR005381 GO:0031047
Tsu05g03215 1106 Pfam XH domain 972 1102 IPR005379 -
Tsu05g03215 1106 PANTHER RIBONUCLEASE P SUBUNIT P38 1 51 IPR045177 GO:0080188
Tsu05g03215 1106 PANTHER RIBONUCLEASE P SUBUNIT P38 351 396 IPR045177 GO:0080188
Tsu05g03215 1106 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 351 396 - -
Tsu05g03215 1106 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 229 276 - -
Tsu05g03215 1106 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 161 219 - -
Tsu05g03215 1106 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 456 502 - -
Tsu05g03215 1106 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 500 1105 - -
Tsu05g03215 1106 MobiDBLite consensus disorder prediction 332 363 - -
Tsu05g03215 1106 CDD RRM_like_XS 586 693 IPR005380 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g03215 Tsu-Chr5 43340885 43349308 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g03215 - - gmx:100790814 1451.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g03215 05 43340885 43349308 Tsu05g03215 05 43340885 43349308 ECH
Tsu03g00590 03 5109975 5126061 Tsu05g03215 05 43340885 43349308 PCT