Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00590 ATGAATTTGATTACCCAAATCCGTTGTACATGCTCTCATAGAGCGTTAGGTCACACACAATATTCTAGATCCAGTTTCAGTGGTATAAGCCCGGGAGAAACTATAATGTCTCACAGCTCTGAGGAGGATACAGATATAAGTGATTCTGAGATAAGTGAGTATGAAGATAAATGTTATGAAGAACTGAAAAATGGAAGTCAGAATGTGAAATCCTCGGATGACAAGTTCACTTGTCCATACTGCCCTAAGAAAAGAAAACGGGATTATATGTACAAGGAACTCCTGCAACATGCTTCTGGGGTGGGTCAGAGTAGTTCCCAAAAGAGAAAGCCAAGAGAAAAGGCTACTCATTTGGCTTTAGTGAAATATTTGGAAAAAGATCTTATGAATATAGATGAGACTCCATCGGAACCAGTTGATAAAAGTGACACTCCTATTGATTCTGATGAACAGTTTGTGTGGCCCTGGATTGGAATTGTAGTTAATATTCCCACTAGCCGGACACCAGATGGACGCACTGTTGGGGCGAGTGGTTCCAAGCTTAGGGATGAGTACAGAAGTAGGGGTTTCAATCCATTTCGAGTCAGTCCTCTATGGAATTTCCGAGGTCACACTGGAACTGCCCTTGTGGAATTCAATAAAAACTGGCCAGGCTTAGATAATGCGCTCGCATTTGAAAAAGCGTATGCATCGGAACATCATGGGAAAAAGGATTGGATTGTTAATAAGCAGCAGCTGTCGGGTCTTTATGCGTGGGTTGCCCGAGCAGATGACTACAAAGAAAACAATATCATTGGGGAACATCTGCGAAAGATGGCAGATATCAAAACCATACCGGAACTTATGGAAGAAGAAGCTCGAAGGCAGGATAAACTTGTGTCCAATTTGACCAATATAATTCAAGTAAAAAACAAGCACTTAATTGAGATAGAAGCAAGATGCACCGAGACTACGCACAAAATGGATTCTGCTATGTCAGAAAAAGATCTGCTCATTCAATCTTATAATGAAGAGATAAAGAAAATACAGTCAAGTGCTAAGGATCATTTCCAAAGGATTTTTAATGATCACGAAAAGCTTAAATTGCAACTGGAAACTCAGAAAAAAGAGCTTGAGACACGAAGACTTGCATTAGAAAAGCGTGAAGCACATAAtgaaagtgaaagaaaaaagttGGCAGAAGAGCTGGCGGAGAATACAACGAAAAATAGCTCTCTTCAGATGGCTTCTCTGGAGCAATTGAAAGCTGATGAAAATGTTATGAAACTGGCTGAAGATCAACAGatacaaaaagagaaACTCCATGCTAAAATCATTCAGCTTGAGAAACAACTGGATATGAAACAAAAGCTGGAATTGGAGATTCAGCAACTAAAAGGATCACTTAGTGTGTTGAAGCACatagaagatgatgatgatgtagaAGTTTTGAAGAAGGTGGATGATTTGCACATGGGTTTAAGAGAGAAGGAACAGGCACTTCAAGACTTAGAAGACCTGAACCAAACACTAGTCGTTAAGGAGCGTAAGAGTAATGATGAACTGCAGGAAGCTCGAAAAGAACTGATTAATGCCATTAAAGAGATAGCAACTCGAGCCCATATTGGTGTGAAGAGAATGGGGGAACTTGACACTGGACCATTCCATGAAGCTATGAAGAAAAGATATAATGAGGAGGAAGCTGAAGACAAAGCTACAGAACTATGTTCCTTGTGGGAAGAGTATCTAAAAGACCCAGATTGGCATCCATTCAAAGTTGTCATGGTTGGTGGGAAAGAAAAGgAAATCATTAAAGATGACGATGAAAAGCTGAATGGGCTGAGAAAAGAAGTGGGTGAAGATGCTTATAATGCAGTGGTGGCAGCGTTAACGGAGATTAATGAATATAATCCGAGTGGTCGCAATGTTCTCCTGAACATTATATTCAGTGGATTTATTTCAGAAAGGATGATTGATGATGGCAGTGGCGGCGGCGGCGGCGGCAAGAATGAACATGGGAGAAGACATATATTGATGTTAAACTTaagatcTGAACTTGATGGTGCCGCTACACTCTTTTCATCAAAGGGTTTGGCTTTGGGCATTAAAGAGATAGCAACTCGAGCCCGTATTGGTGTGAAGAGAATGGGGGAACTTGATACTGGACCATTCCATGAAGCTATGAAGAAAAGACCCACATTGGCATCCATTCAAAGTTTGATGGGAAAGAGAAAgtgCATGAAGTGTAGCAATTTGCCAGAACAAATATGCAATGATATCAAACACTTCTTTGATAAGTTGAAGGAGAAGCACAATGTTGAAGAATCAGAAGAGAACAGTGATGAAATACAAAGTTCTGAATCTGAAGATAAACAACGTTTCAAGgaaaaacTGCGTGCTCAAAAAATTGAGCACGAAAAGCTAGAAGTGGAGATTCGGAACCTAAATGCAACACTAAATATGTTGAAGGACTTTGAAAATGAACAACTTAGGAAGAAGTTAGATGTTTTGATGATGGATTTAAGGAAGAAAGAGGATTCACTTCATGAGTTAGAAGAGTTTAACCAGAAACTAATCACTAAGGAACGTAAGAGTGACTATGAGTTGCAATATGCTCGAAAAAAACTGATAAGTATCATTAAAGAAATATCAACTAAAGATGACCATATTGGTGTGAAGAAAATGGCAAAATTCAATGCCAAACCATTCATTGATGCTATGAAGAAAAGATACAATAAGGATGAAGCTGAAATTTTAGGTGCAAAATTGTACTCACTGTGGGAAGAGAATATAAAGGATCCAAATTGGAACCCATTCAAAGTTGTTTTCGTCGATGGGGTAGCTAAGCAAGTTATAATTAACGATGAAGACGAAAAGCTGAATATGCTGAAGAGAAGAATTGGTAAAGAGGCATATAATGATATGGTAGCAGCTTTGatagagaaaaatgaatataattCTAGTGGGGAATACTCAATCTTAGAATTATGGAACTACGAAAAGAAAAGGAGAGCAACATTACAAGAAGGAATTCAGTTTCTGTCGAGCTACCGATCAAATAAACGCAAGAGGGGGAACAGTGATATAGTGAGCTACAAAGAGGATACCAACAGGGTCAAAAGATTGATCCAAAAACCCAAATGTTGGAATTGTGGAACCGGAAAAGGAGTCGAGATGGGCATTTGA 3165 0.3829 MNLITQIRCTCSHRALGHTQYSRSSFSGISPGETIMSHSSEEDTDISDSEISEYEDKCYEELKNGSQNVKSSDDKFTCPYCPKKRKRDYMYKELLQHASGVGQSSSQKRKPREKATHLALVKYLEKDLMNIDETPSEPVDKSDTPIDSDEQFVWPWIGIVVNIPTSRTPDGRTVGASGSKLRDEYRSRGFNPFRVSPLWNFRGHTGTALVEFNKNWPGLDNALAFEKAYASEHHGKKDWIVNKQQLSGLYAWVARADDYKENNIIGEHLRKMADIKTIPELMEEEARRQDKLVSNLTNIIQVKNKHLIEIEARCTETTHKMDSAMSEKDLLIQSYNEEIKKIQSSAKDHFQRIFNDHEKLKLQLETQKKELETRRLALEKREAHNESERKKLAEELAENTTKNSSLQMASLEQLKADENVMKLAEDQQIQKEKLHAKIIQLEKQLDMKQKLELEIQQLKGSLSVLKHIEDDDDVEVLKKVDDLHMGLREKEQALQDLEDLNQTLVVKERKSNDELQEARKELINAIKEIATRAHIGVKRMGELDTGPFHEAMKKRYNEEEAEDKATELCSLWEEYLKDPDWHPFKVVMVGGKEKEIIKDDDEKLNGLRKEVGEDAYNAVVAALTEINEYNPSGRNVLLNIIFSGFISERMIDDGSGGGGGGKNEHGRRHILMLNLRSELDGAATLFSSKGLALGIKEIATRARIGVKRMGELDTGPFHEAMKKRPTLASIQSLMGKRKCMKCSNLPEQICNDIKHFFDKLKEKHNVEESEENSDEIQSSESEDKQRFKEKLRAQKIEHEKLEVEIRNLNATLNMLKDFENEQLRKKLDVLMMDLRKKEDSLHELEEFNQKLITKERKSDYELQYARKKLISIIKEISTKDDHIGVKKMAKFNAKPFIDAMKKRYNKDEAEILGAKLYSLWEENIKDPNWNPFKVVFVDGVAKQVIINDEDEKLNMLKRRIGKEAYNDMVAALIEKNEYNSSGEYSILELWNYEKKRRATLQEGIQFLSSYRSNKRKRGNSDIVSYKEDTNRVKRLIQKPKCWNCGTGKGVEMGI 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00590 1054 Coils Coil 354 381 - -
Tsu03g00590 1054 Pfam XS domain 149 260 IPR005380 GO:0031047
Tsu03g00590 1054 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 36 84 - -
Tsu03g00590 1054 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 689 724 - -
Tsu03g00590 1054 CDD RRM_like_XS 152 259 IPR005380 GO:0031047
Tsu03g00590 1054 Gene3D XS domain 145 315 IPR038588 -
Tsu03g00590 1054 Coils Coil 480 532 - -
Tsu03g00590 1054 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 783 1019 - -
Tsu03g00590 1054 Pfam XS zinc finger domain 78 121 IPR005381 GO:0031047
Tsu03g00590 1054 MobiDBLite consensus disorder prediction 765 787 - -
Tsu03g00590 1054 Coils Coil 424 468 - -
Tsu03g00590 1054 MobiDBLite consensus disorder prediction 379 397 - -
Tsu03g00590 1054 PANTHER RIBONUCLEASE P SUBUNIT P38 36 84 IPR045177 GO:0080188
Tsu03g00590 1054 PANTHER RIBONUCLEASE P SUBUNIT P38 689 724 IPR045177 GO:0080188
Tsu03g00590 1054 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 84 636 - -
Tsu03g00590 1054 MobiDBLite consensus disorder prediction 379 404 - -
Tsu03g00590 1054 Coils Coil 784 857 - -
Tsu03g00590 1054 Pfam XH domain 538 636 IPR005379 -
Tsu03g00590 1054 Pfam XH domain 886 1015 IPR005379 -
Tsu03g00590 1054 PANTHER RIBONUCLEASE P SUBUNIT P38 84 636 IPR045177 GO:0080188
Tsu03g00590 1054 PANTHER RIBONUCLEASE P SUBUNIT P38 783 1019 IPR045177 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00590 Tsu-Chr3 5109975 5126061 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00590 - - minc:123192037 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00590 03 5109975 5126061 Tsu03g00590 03 5109975 5126061 ECH
Tsu03g00590 03 5109975 5126061 Tsu05g03215 05 43340885 43349308 PCT