Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02537 ATGAGTGTAGATCTGAAGAAAACTACCTCTAATGGCCATGAGAAAATGTTAATACCACAAGAACAGCAGGGAAAGATCAACGAGGTGAGAAGGTTAATCGGACCACTGTCTGGTAAGGCATCGGTTTATTGTTCTGATGCATCCATCTCAAGGTATTTAAGGGCACGGAATTGGAATGTCAAGAAAGCAGCTAAAATGTTGAAGCAGACCCTTAAATGGAGAGAAGAATATAAACCAGAAGAGATTCGCTGGGAAGATATTGCTCAAGAAGCAGAAACCGGAAAGATCTACAGATCAAATTATATTGACAAGCATGGGAGAACAGTACTTGTAATGAGACCTGCTCGTCAGAACTCAAAGTCAACAAAAGGACAAATTAAGTATTTGGTGTACTGCATGGAGAATGCTATTCTAAATCTTTCACCAGAACAGGAACAGATGGTCTGGCTGATTGATTTCCAGGGTTTCAATATGTCGCACATATCTATCAAAGTGACACGCGAAACTGCCAATGTATTACAAAACCATTATCCTGAACGGCTGGGTTTGGCAATACTGTACAATCCACCTAAAATCTTTGAACCATTCTTCACGATGGTAAAGCCCATATTAGAGACCAAGACTTATAACAAAGTCAAGTTTGGTTATTCTGATGATCAGAATACCAAGAAGATTATGGaggatttgtttgatttggAGCATCTTGAATCTGCATTCGGTGGGAACGATAATACACCATTtgacataaataaatatgctgagagaatgaaagaagatgataCGAAGATTCCATCTTTCTGGACAAGGGAAATTTCTCCATCTTCAGTCCCAATTGATGTTCCTTCTTTAGATTCGATTAAATTAGACACAGATTCTGATGCCTCCGACAATGAAAAAatagtttcttcttctgactcaGTGACTGATATTGGCTCCGTCGACCCTGATCAAAACTCTATTATTCAAGAGGATCGGAATGCGAATGCTGCTATGCATTAG 999 0.3664 MSVDLKKTTSNGHEKMLIPQEQQGKINEVRRLIGPLSGKASVYCSDASISRYLRARNWNVKKAAKMLKQTLKWREEYKPEEIRWEDIAQEAETGKIYRSNYIDKHGRTVLVMRPARQNSKSTKGQIKYLVYCMENAILNLSPEQEQMVWLIDFQGFNMSHISIKVTRETANVLQNHYPERLGLAILYNPPKIFEPFFTMVKPILETKTYNKVKFGYSDDQNTKKIMEDLFDLEHLESAFGGNDNTPFDINKYAERMKEDDTKIPSFWTREISPSSVPIDVPSLDSIKLDTDSDASDNEKIVSSSDSVTDIGSVDPDQNSIIQEDRNANAAMH 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02537 332 MobiDBLite consensus disorder prediction 289 332 - -
Tsu05g02537 332 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Tsu05g02537 332 Gene3D - 3 270 IPR036865 -
Tsu05g02537 332 CDD SEC14 92 242 IPR001251 -
Tsu05g02537 332 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 304 - -
Tsu05g02537 332 PANTHER GH16843P 1 304 - -
Tsu05g02537 332 Pfam CRAL/TRIO domain 93 241 IPR001251 -
Tsu05g02537 332 SUPERFAMILY CRAL/TRIO N-terminal domain 18 86 IPR036273 -
Tsu05g02537 332 MobiDBLite consensus disorder prediction 299 325 - -
Tsu05g02537 332 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Tsu05g02537 332 SMART sec14_4 90 244 IPR001251 -
Tsu05g02537 332 Pfam CRAL/TRIO, N-terminal domain 45 68 IPR011074 -
Tsu05g02537 332 SUPERFAMILY CRAL/TRIO domain 84 262 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02537 Tsu-Chr5 34532057 34536864 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02537 - - gmx:100777106 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02537 05 34532057 34536864 Tsu05g02537 05 34532057 34536864 ECH
Tsu05g02537 05 34532057 34536864 Tsu03g02095 03 22120331 22123967 PCT