Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02520 ATGGCAATGAAAACCAAAAACAGCAAGGTGGGAAATGAATTTGGTTGTGGTTTCATGGGAAAAATTCTCCACCTCAAAACTCCTAGGCTAAGAAACTCATTAGTTCATTCCCTACCCATGAAAACTAATGATCATTTCTTAAATGAACCAAAGTTTTCTCCAAATAAAGAATCAAATTTTCCACAAAGAATCTCCAACAACACTATTAATCCAACAAACCACCGGAACCGTATTATTTTAGATGCTACTTCAAGAAGCTCGGTATCATCATCGTCCACTGGTAGTTCAACCCACAAAAGGGTTGAACAAAACCATAACACGAACGATGATGCCAAACTTCGAATAGAATCAATGCGAAATTCTCTACAACTTGCCAGAATAAGTACTATTCGCACGTGCAACAACGAGAACAAGTCCACTGCCAAAAGCTTTGCACCCTTGAAACTAACTGGAAACTTGCTTGTGAACAACACACCAAGAAGAAAGAGTGTTGAATGTTTACCTAAGCATTTAGAGTTAAACTCTGTGTCAAGCTTTTacaatagtaataataatgaaaGAAAAGTTGTTATGGGGAATATCATGAGAAAGAACAGTAATGAACTTTCACAGTTTCTAAATCAAAGACACAATAGTGTTGACCCTGAAGTGTTGAAATCTAAGGGAAATGAAGCATATAAAAAGGGTGATTTTGATGAGGCTTTGGCTTTGTATGAAAAAGCTATTTCTCTTGACTCAAATAAGGCAACTTATCATTGCAACAAGAGTGCAGCTTTGATTGGATTAGGAAGATTTCAAGAAGCAATTATTGAGTGTGACGAATCTATCCGGTTGGATCCTTCTTACAACAGAGCTCACAATCGTTTGGCAACGATATATTTCAGATTAGGAGAAGCACAAAAGACATTGGATTGCAACAGATCAACCTCATATGTTGATTCTGTACTTACTTTTCAAGCTCAAGCTCTACAAAATCACATTAACAAATGCATTGAAGCTAGGAAATTCAATAAATGGAATGTTATACTAAAGGAAACACATTCTGCATTATCCTTAGGTGCTGATTCAGCTCCACAGATCTATGCTTTACAAACTGAAGCCTTATTGATGCTGCTAAGATATGAAGAGGCACATTCTGTTTATGATAAAATGCCAAAATTTTCAATTGATTGGTGTAACAAGATATTTGGAATAGCTATCAGTTCTTACCTGTTGATGATAGGTTCACAGGTTTACTTGGCCTCTGGCAGGTTTGAGGATGCTGTGACAACAGCTCAAAAAGCAGCTAAAGTTGAACCAAGCAATAGAGAGGTGAATACTGTGTTAAGACGAGCCAGGGCTGTAACATCAGCTAGAATGAGTGGAAATTTGCTCTTCAAGGCATCAAAATTTATGGAAGCATGTGCAGTATACAATGAAGGACTTGATCATGATCCACACAACTCAGTTCTGTTATGCAACCGAGCAGCGTGTCGTTCTAAGCTAGGCCAATATGAAAAAGCAATTGAAGATTGTGATGCAGCACTTCTGCTTAGTCCTTGTTATAGCAAAGCAAAGCTAAGGAGGGCATATTGTAATGCCAagTTGGAAAGATGGGAAGTTTCCATTCAAGACTATGAAATGCTGATAAGAGAAAAACCAGGAGATGAAGAAGTCGCAAGGGCTTTGTTCGAGGCTCAGCTCCAACTCAAGATGCTACATGGTGAAGATATTAAGGATTTGAAATTTggatcaaatttgatttttatatcaAGTAATGATCGTTTTAGACATTATGTAACCTCACCTGGTATGAGTGTTGTGCTGTTTTGTAACAAGGGAACACACAAGCAAGTGTTGATGATGTTGGAACAAACCAGCAAGAGATTCCCATCTGTTAATTTCCTCAAGGTGGAGATTGAAGACCACCCCTACTTGGCGAAATCAGAAGGTGTTAACTCAACTCCATCCTTCAAGATATACAAGAATGGATCAAGGGTTAAAGAGATTTCAGGCAACAATCATGCATTGTTAGAAAGATCAGTTAAATTGTATAGTAGCTGA 2043 0.372 MAMKTKNSKVGNEFGCGFMGKILHLKTPRLRNSLVHSLPMKTNDHFLNEPKFSPNKESNFPQRISNNTINPTNHRNRIILDATSRSSVSSSSTGSSTHKRVEQNHNTNDDAKLRIESMRNSLQLARISTIRTCNNENKSTAKSFAPLKLTGNLLVNNTPRRKSVECLPKHLELNSVSSFYNSNNNERKVVMGNIMRKNSNELSQFLNQRHNSVDPEVLKSKGNEAYKKGDFDEALALYEKAISLDSNKATYHCNKSAALIGLGRFQEAIIECDESIRLDPSYNRAHNRLATIYFRLGEAQKTLDCNRSTSYVDSVLTFQAQALQNHINKCIEARKFNKWNVILKETHSALSLGADSAPQIYALQTEALLMLLRYEEAHSVYDKMPKFSIDWCNKIFGIAISSYLLMIGSQVYLASGRFEDAVTTAQKAAKVEPSNREVNTVLRRARAVTSARMSGNLLFKASKFMEACAVYNEGLDHDPHNSVLLCNRAACRSKLGQYEKAIEDCDAALLLSPCYSKAKLRRAYCNAKLERWEVSIQDYEMLIREKPGDEEVARALFEAQLQLKMLHGEDIKDLKFGSNLIFISSNDRFRHYVTSPGMSVVLFCNKGTHKQVLMMLEQTSKRFPSVNFLKVEIEDHPYLAKSEGVNSTPSFKIYKNGSRVKEISGNNHALLERSVKLYSS 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02520 680 MobiDBLite consensus disorder prediction 48 101 - -
Tsu05g02520 680 Pfam Thioredoxin 607 669 IPR013766 -
Tsu05g02520 680 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Tsu05g02520 680 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 679 - -
Tsu05g02520 680 Pfam TPR repeat 222 257 - -
Tsu05g02520 680 SUPERFAMILY Thioredoxin-like 526 668 IPR036249 -
Tsu05g02520 680 MobiDBLite consensus disorder prediction 43 110 - -
Tsu05g02520 680 ProSiteProfiles TPR repeat profile. 215 248 IPR019734 GO:0005515
Tsu05g02520 680 Pfam Tetratricopeptide repeat 484 513 IPR001440 GO:0005515
Tsu05g02520 680 SUPERFAMILY TPR-like 215 437 IPR011990 GO:0005515
Tsu05g02520 680 Gene3D Glutaredoxin 575 679 - -
Tsu05g02520 680 Gene3D Tetratricopeptide repeat domain 213 567 IPR011990 GO:0005515
Tsu05g02520 680 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 679 IPR044534 -
Tsu05g02520 680 SUPERFAMILY TPR-like 453 564 IPR011990 GO:0005515
Tsu05g02520 680 SMART tpr_5 448 481 IPR019734 GO:0005515
Tsu05g02520 680 SMART tpr_5 249 282 IPR019734 GO:0005515
Tsu05g02520 680 SMART tpr_5 215 248 IPR019734 GO:0005515
Tsu05g02520 680 SMART tpr_5 482 515 IPR019734 GO:0005515
Tsu05g02520 680 SMART tpr_5 283 316 IPR019734 GO:0005515
Tsu05g02520 680 SMART tpr_5 401 435 IPR019734 GO:0005515
Tsu05g02520 680 SMART tpr_5 516 549 IPR019734 GO:0005515
Tsu05g02520 680 CDD TRX_family 589 667 - -
Tsu05g02520 680 Pfam Tetratricopeptide repeat 411 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02520 Tsu-Chr5 34356955 34360234 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02520 K09527 - gmx:100791862 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02520 05 34356955 34360234 Tsu05g02520 05 34356955 34360234 ECH
Tsu05g02520 05 34356955 34360234 Tsu03g02111 03 22361214 22365124 PCT