Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02111 ATGGAAGGAAAAACCAATAAGAACAAGGTGGAAAAAGTCGAATTAGGCTGCAATTTCATGGGAAAAATCTTCAAACTCAAAACAAACAAGCTCAGAAATTCATCATCTGTTCATTCACTACCCATCAAGACAATTAACAATCCACAACAAAAAGAATCAAAAGGGTCACCAAATCACATCTCGAAAATTCCAACGGAGCCTCGACAACAAAAAAGCACCACTTTTTCTCACACACCTACAGATTCTGCAAGAAGCTCAATTCAACAGAAAGAGCCTAATGGTAATTCTTTAGCACTTGCAAGAATAAGCACTTCTAGTCGTCCGCGTGACAACGAAAACAAATCTCCAAGCAAAGATTTGAGTACAATAAAACCAACTGGAAATTTGCTTACAAATAGTACCTATAACAGTCCAAGAACAAGTGTTACAAAGAATAATAGAGAGTTAAATTCTGTGTCATGTTCTTTGAATAATAGTGTAATGGGGAATATAGTGAGGAAAAGTGGTGATGGGGTTGCGCAATTTCGAAGTCCTAGGAGCAACAGAGTACTAGACCCTGAGGTGTTGAAATCAATGGGAAATGAAGCATACAAGCAAGGAAGATTTTCTGAGGCTTTAGCTTTGTATGAACGAGCTATTGCTATTGATTCGAATAAGGCAACTTATCATTGCAATAAGAGTGCTGCTTTAATTGGTTTGGGAAGGTTTAAGGATGCCATTGTTGAGTGTGAGGAAGCTATTAGGATTGAACCTTCCTATGCTAGAGCTCATAGCCGTTTGGCTACAATATATTTCAGGTTGGGAGAAGCTGAAAAGGCATTGAATTGTAATAAAGAAACTCCATATTTTGATTCAGAACTTGCTCACCAAGCTCAGACTCTTCAAATTCACCTTGACAAATGCAGTGAAGCTAGGAAAGTCAATGACTGGAAAGTTATATTAAAAGAAACAAAGTCTGCAATATTCTTAGGTGCTGATTCAGCTCCAAAGGTCTATGCTTTACAAACTGAAGCCTTGCTGAAACTCTTAAGGCATCAAGAAGCTTATGCAACCTACgagaaaattccaaaatttgaTCTTGATTggtgtaaaaaattatttggaccTGTTTCTAGTGCTTACCTTCTGATTATAGGAGCACAAGTTTACTTAACAACCGGCAGATTTGAGGATGCTGTGAAAGCAACACAACAAGCAGCTAAACTTGATCCAAGCAACAGTGATGTGAACGCAGTGGTACGAAGGGCAAGAGCCGCCACATCTGCAAGGTTGAGTGGTAACTTGCTCTTCAAGGCATCAAAGTTCACGGAAGCATACGCTGTATACAATGAAGGACTAGAGCACGATCCTTTCAACTCAGTTCTTCTATGTAACAGGGCGGCATGCCGTTCTAAACTAGGTCAATTTGAGAAGGCAATTGAAGATTGCAATGTAGCTCTTACAGTTCAACCTAGTTATAGCAAGGCAGTGTTGCGACGGGCTGATTGCAATGCCAAGTTGGAAAGATGGGAAGCTGCAATTCAAGACTATGAAATGTTGATAAGAGAAAAGCCAGGGGACGAGGAAGTTGCTAGGGCTTTGTTTGAGATCCAGCTAAAACTAAAGATTATGCGCGGCGAAGATATTAAGGACTTAAAATTTGGTTCAAATTTGTTTTGTATATCAACCAATGATAGGTTTAGACATTATGTAACCTCACCTGGTATGTCTGTGGTGCTCTTTTGCAACAAGGTTACTCATAAGCAAGTTTTGTTGGTGTTGGAACAAACCTGCAAGAGATTCCCATCAGTTAATTTCCTTAAGGTGGAAATTGAGGACCATCCTTACTTAACAAAATCAGAAGGAGTGAACTCTGTCCCAGCATTCAAAATATACAAGAATGGATCAAGGGTAAAAGAAATCTCTGGCAACAAGCATGAGTTGCTAGAAAgatcaattaaattatatagCAGCTGA 1956 0.3824 MEGKTNKNKVEKVELGCNFMGKIFKLKTNKLRNSSSVHSLPIKTINNPQQKESKGSPNHISKIPTEPRQQKSTTFSHTPTDSARSSIQQKEPNGNSLALARISTSSRPRDNENKSPSKDLSTIKPTGNLLTNSTYNSPRTSVTKNNRELNSVSCSLNNSVMGNIVRKSGDGVAQFRSPRSNRVLDPEVLKSMGNEAYKQGRFSEALALYERAIAIDSNKATYHCNKSAALIGLGRFKDAIVECEEAIRIEPSYARAHSRLATIYFRLGEAEKALNCNKETPYFDSELAHQAQTLQIHLDKCSEARKVNDWKVILKETKSAIFLGADSAPKVYALQTEALLKLLRHQEAYATYEKIPKFDLDWCKKLFGPVSSAYLLIIGAQVYLTTGRFEDAVKATQQAAKLDPSNSDVNAVVRRARAATSARLSGNLLFKASKFTEAYAVYNEGLEHDPFNSVLLCNRAACRSKLGQFEKAIEDCNVALTVQPSYSKAVLRRADCNAKLERWEAAIQDYEMLIREKPGDEEVARALFEIQLKLKIMRGEDIKDLKFGSNLFCISTNDRFRHYVTSPGMSVVLFCNKVTHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLTKSEGVNSVPAFKIYKNGSRVKEISGNKHELLERSIKLYSS 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02111 651 Gene3D Tetratricopeptide repeat domain 185 538 IPR011990 GO:0005515
Tsu03g02111 651 Gene3D Glutaredoxin 548 650 - -
Tsu03g02111 651 MobiDBLite consensus disorder prediction 32 144 - -
Tsu03g02111 651 CDD TRX_family 560 647 - -
Tsu03g02111 651 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 649 - -
Tsu03g02111 651 SUPERFAMILY TPR-like 422 535 IPR011990 GO:0005515
Tsu03g02111 651 Pfam TPR repeat 193 228 - -
Tsu03g02111 651 ProSiteProfiles TPR repeat profile. 186 219 IPR019734 GO:0005515
Tsu03g02111 651 Coils Coil 493 513 - -
Tsu03g02111 651 MobiDBLite consensus disorder prediction 32 106 - -
Tsu03g02111 651 Pfam Thioredoxin 582 644 IPR013766 -
Tsu03g02111 651 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 649 IPR044534 -
Tsu03g02111 651 ProSiteProfiles TPR repeat profile. 373 406 IPR019734 GO:0005515
Tsu03g02111 651 MobiDBLite consensus disorder prediction 118 144 - -
Tsu03g02111 651 Pfam Tetratricopeptide repeat 380 452 - -
Tsu03g02111 651 Pfam Tetratricopeptide repeat 465 520 - -
Tsu03g02111 651 SUPERFAMILY TPR-like 185 408 IPR011990 GO:0005515
Tsu03g02111 651 SMART tpr_5 373 406 IPR019734 GO:0005515
Tsu03g02111 651 SMART tpr_5 453 486 IPR019734 GO:0005515
Tsu03g02111 651 SMART tpr_5 186 219 IPR019734 GO:0005515
Tsu03g02111 651 SMART tpr_5 419 452 IPR019734 GO:0005515
Tsu03g02111 651 SMART tpr_5 254 287 IPR019734 GO:0005515
Tsu03g02111 651 SMART tpr_5 487 520 IPR019734 GO:0005515
Tsu03g02111 651 SMART tpr_5 220 253 IPR019734 GO:0005515
Tsu03g02111 651 SUPERFAMILY Thioredoxin-like 549 645 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02111 Tsu-Chr3 22361214 22365124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02111 198 517 Glycosyltransferase AT3G04240 21.493 1.09e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02111 K09527 - gmx:100787041 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02520 05 34356955 34360234 Tsu03g02111 03 22361214 22365124 PCT