Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02497 ATGGGTTTGTCTGTTGCCTTTCATCATGGAGGACATTTTGTTAGAGATTGGATTATCTCTTACAAAGGGGGGGAGAAAACTGTATTCAAACGTTTAGATCCTGATAAGTGGACTTATTTTGAGATGACTAGTTTGGTTGAAGAAGACCTCAAAATTAGTAAGGGGTATAGGTTGTGGTGGATGCTAGATGAAGATGTTAATTTTAGGCCTGTAAGGTTAGATGAAGATGCTTATGAAGTGAAGGACTATGCTGTTAGTAAGAATTGTGTTGCAAACATATTTGTTGAGCATGATGTGGATGAAACAAGTGCGCTAGAAGATATTCCTAACTATATTAATCTTATGGGTGAAAGTTCTCAGGAGGTAGTGGATACAGACAAGGGtagtagtgatgataatgatgtttgttatgataatgaaaatgagGATGAAATTGATGGTGAAGAGGCAATTAGTAATAGTGAAGATGAGAGGGGTGTGACTTTTGATGATAGTGAAGATGAGAGAGCTTTGGGACTTGAAGATGGTTTTGAACATGTTGAAACAAGTACCCCAATGAATGTTACAAATTGTCTGTTAATTGAAGGAAAATCATGTGAACCTGACTGGGATATGGGCTATATAAGTGAAGAATTAAATTCTGATGACCCTGATGATTCTGACATAGAAAAAGGACCTAGGGCTGAAACATTTAATATGGACCATTTAAATAAGGACACTGAATTTGATATAGGTTTAAACTTTAAGTCACTCTATGAGTTTAAAGAGGCAATTAGAGAGTGGTCTGTGTTAAATAATAGAGAGATTAAGTATGTGAAAAATGACAACGACAGGGTCAGAATTGTCTGCAAGAAGGACTGTGGCTTTTTAGTCCATTGTAGTAGAGTGGGTAggaaacaaacttttaaaataaagacaTGGTTTGGGACCCACAATTGTCCAAAGGTTTTAAATAATAGATCTGCCACTTCCAAATGGGTAGCCAAATCTgtattgaagaagatgatggtTACAGACAATGTCAAGGTGACTGATATAATGGTAGACATGAGGAGAAATCATTCAGTTGGAATTTCATTTTACAGAGCTTGGAAAGCAAAATTGAAGGCTAAGGAAATTTTGGAAGGTCATGCATCTAAGCAATATACTTTGCTTTGGAGGAGGGTGAATAAAAAGGTGGGGAGAGTAAAATCTTCAAAGGAAAGTTTTGATACTTTACTTGCCAAACTACAACACTCGGTATCATCAAAGACGCGTAATTCGGAGCCAAACACTTTTGATCTTACTGTAACCAATGGTTTTCGAAAAAATTCGAGGTCTAATGTGAGGGTTATGAATCTTGAAAACCCTATGAAAGGTGAAGCGAGAGAAGCTTATGAAGGGGGAGATGAGAATGAAAATTCGCTGTCAATCAAGAGGGAATTATCAGATTTTGATGAACCTGTTGCAAGCAAATATGATCCAACCGGAAAAACCCATTCCAtcgatgaatttgaagatcaaagCGATAGGTACAGCCAAAAGAGCACTGATACAAACCATAGTGGACATGTGAGTGACCCTAGCATTGGGAAGACCGATTATTTTGGTTCTCCAAAGCTCAAGCGGTCGTGTTCTAACGTTGAAAATAGGGATGTTGGTAGGCAAATAACTCAATACTTGTCTCCTTCAAATTCACAGTCTTTTGAAGACTTTCGCGATTTATCAACAAACGCAATTGTTAATCTTAAGAGGTGTAGGTCTATGACAAGTCACTGCAGTGCTGATAGAGTGATATTGAAAAGGCATTCTTCAAGTCAAGTACTTCCTTccggaagtaaaaaattgtggtGGAAGTTGTTCGTATGGAGCCACAGGAATATACATAGAACATctagaaaatcaaaacttgttAGTTCTTCAGACACCCTTGAGCCTAAACAAATCAAGGCACTAAGACACGTGCAATCGTCTGTGTCAATTACTAATCATTCCCGTAACAAAATCATCGATGTTGACGATCAAAGCTTAAGGCGGAGCAGATTTCGAAAGCAATGGTTTTCTTTCTCGAAAGAGTCATCCTTTTATGCCAGGGTGGATGCATGGGTCAAAGATCTTGAAATTCAGGAACCAGTTCCTGAGGATGATCTTCTTGACGACGATGCTGGAAGTATTTCCTTCCCACCTTCTCCTGATGCCGGTAGACCAATGGTAAGAAACATATCTCAGATGACTCATTCATATTCAAACCTTTCAAAGGATATTTTGAAAGCCAGTGGTATGGTCCAGCCTCTGAATCCAGCTTCATCAATTGCTCAGATATCCGGCTTTGGTATAAAAGCCATCCCGGTAATTTCACACTTCAACAACCTCCGTTCTGTCAACCTGTCCAACAATTTCATAGTTTGCATCTCACCGGGGTGTCTACCGAGGAGTGTTCAAACACTTAATTTGTCAAGAAACAAGATAAGCACCATTGACGGCCTCAAAGAATTGACCCGGTTACGGGTACTTGACTTATGTTACAACTGCATCACAAGAATTGGACAAGGTTTGTCAAGTTGTACACTTATCAGAGAGCTATATCTTGCTGGGAACAAGATAAATGATATTGAGGGGCTACATAGGTTATTTAAGCTGACAGTTTTGGATTtgagcttcaacaaaatcacgaCAACAAAAGTATTAGGCCAGCTAGTGGCTAATTACAACTCACTCCTAGTCCTTAATCTACTCGGGAATGCTATTCAGAGAAGCGTTGGTGATGAACAACTAAACAAAAGAGTATCTGGTCTCCTTCCAAAGCTGGTGTACCTTAACAATCAACCCATCAAGGCTCAAAGGGCGGTGCGGGAAATATTAATTGACCGTGTTTCCAAAGCTACACACGGGGACAGCAAGAAGCGGAGCTCTGTAAGAAGATCGATGAGTAGAGTAGGACAAGGAGGATCAAGTTCCAGCAGAGGGCATAGAAGCAGTGCAAGTGTTGCACCGAAAAGCAGGAACCAGACAAAGAGGTGA 3000 0.3773 MGLSVAFHHGGHFVRDWIISYKGGEKTVFKRLDPDKWTYFEMTSLVEEDLKISKGYRLWWMLDEDVNFRPVRLDEDAYEVKDYAVSKNCVANIFVEHDVDETSALEDIPNYINLMGESSQEVVDTDKGSSDDNDVCYDNENEDEIDGEEAISNSEDERGVTFDDSEDERALGLEDGFEHVETSTPMNVTNCLLIEGKSCEPDWDMGYISEELNSDDPDDSDIEKGPRAETFNMDHLNKDTEFDIGLNFKSLYEFKEAIREWSVLNNREIKYVKNDNDRVRIVCKKDCGFLVHCSRVGRKQTFKIKTWFGTHNCPKVLNNRSATSKWVAKSVLKKMMVTDNVKVTDIMVDMRRNHSVGISFYRAWKAKLKAKEILEGHASKQYTLLWRRVNKKVGRVKSSKESFDTLLAKLQHSVSSKTRNSEPNTFDLTVTNGFRKNSRSNVRVMNLENPMKGEAREAYEGGDENENSLSIKRELSDFDEPVASKYDPTGKTHSIDEFEDQSDRYSQKSTDTNHSGHVSDPSIGKTDYFGSPKLKRSCSNVENRDVGRQITQYLSPSNSQSFEDFRDLSTNAIVNLKRCRSMTSHCSADRVILKRHSSSQVLPSGSKKLWWKLFVWSHRNIHRTSRKSKLVSSSDTLEPKQIKALRHVQSSVSITNHSRNKIIDVDDQSLRRSRFRKQWFSFSKESSFYARVDAWVKDLEIQEPVPEDDLLDDDAGSISFPPSPDAGRPMVRNISQMTHSYSNLSKDILKASGMVQPLNPASSIAQISGFGIKAIPVISHFNNLRSVNLSNNFIVCISPGCLPRSVQTLNLSRNKISTIDGLKELTRLRVLDLCYNCITRIGQGLSSCTLIRELYLAGNKINDIEGLHRLFKLTVLDLSFNKITTTKVLGQLVANYNSLLVLNLLGNAIQRSVGDEQLNKRVSGLLPKLVYLNNQPIKAQRAVREILIDRVSKATHGDSKKRSSVRRSMSRVGQGGSSSSRGHRSSASVAPKSRNQTKR 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02497 999 ProSiteProfiles Leucine-rich repeat profile. 827 849 IPR001611 GO:0005515
Tsu05g02497 999 Pfam Leucine rich repeat 804 861 IPR001611 GO:0005515
Tsu05g02497 999 SMART LRR_typ_2 825 848 IPR003591 -
Tsu05g02497 999 SMART LRR_typ_2 870 892 IPR003591 -
Tsu05g02497 999 SMART LRR_typ_2 781 804 IPR003591 -
Tsu05g02497 999 Gene3D Ribonuclease Inhibitor 719 846 IPR032675 -
Tsu05g02497 999 SMART LRR_sd22_2 870 891 - -
Tsu05g02497 999 SMART LRR_sd22_2 848 869 - -
Tsu05g02497 999 SMART LRR_sd22_2 803 824 - -
Tsu05g02497 999 SMART LRR_sd22_2 825 847 - -
Tsu05g02497 999 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 391 998 - -
Tsu05g02497 999 Pfam Leucine Rich Repeat 783 802 IPR001611 GO:0005515
Tsu05g02497 999 ProSiteProfiles Leucine-rich repeat profile. 805 826 IPR001611 GO:0005515
Tsu05g02497 999 ProSiteProfiles Leucine-rich repeat profile. 850 871 IPR001611 GO:0005515
Tsu05g02497 999 MobiDBLite consensus disorder prediction 954 999 - -
Tsu05g02497 999 Gene3D Ribonuclease Inhibitor 847 944 IPR032675 -
Tsu05g02497 999 ProSiteProfiles Leucine-rich repeat profile. 872 893 IPR001611 GO:0005515
Tsu05g02497 999 SUPERFAMILY Outer arm dynein light chain 1 775 939 - -
Tsu05g02497 999 Pfam MuDR family transposase 242 304 IPR004332 -
Tsu05g02497 999 MobiDBLite consensus disorder prediction 120 140 - -
Tsu05g02497 999 MobiDBLite consensus disorder prediction 968 999 - -
Tsu05g02497 999 MobiDBLite consensus disorder prediction 445 526 - -
Tsu05g02497 999 MobiDBLite consensus disorder prediction 453 507 - -
Tsu05g02497 999 PANTHER NISCHARIN RELATED 391 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02497 Tsu-Chr5 33955054 33961511 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02497 - - gmx:100813969 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02497 05 33955054 33961511 Tsu05g02497 05 33955054 33961511 ECH
Tsu05g02497 05 33955054 33961511 Tsu03g02132 03 22711676 22713957 PCT