Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02132 ATGGCGATGTGTAGATGTGTCTCTGTTTTGATTGGAAGGAAGGATAAAatcaagGGCATTGAAGGATCTTCAAAAGGGGACCTGAAAAAGATACATGCCACCAAAGTACAACAACCGACGATATTATCGAAGAGTCGTGATATAAAGCCAGATGCCACCCATGATGTTACAACCTGTGGTACGCAGATGAATTCAAGATGCAATGTGAAAGCTACGAGTCTCGAGAGTCATGCGAAGAGTGAAGTAGAGGAAGCTTACGAAGGAGAAGATGAGCATGAAGATTCACCCTCCATCAAGAGAGAGTTCTCTGATTTTGATCTCCAAGTTCATGAACCTGTTGCAAGCAAAGGAGGATGTGATGCAACAGGTAAAGGGATGAACTCCCCCATTTTATATAAAGAACAAGCCAACATTCAATTGGAAGACAGAGACAAAAAGAGTGTTGATTTATTCCTAAGTGGGCATGTCAGTGATCCTGGAATGGGAAGGTCCAACTTCTGGGCTTCTCCACAGCTCAAGCGATCTTGCTCTAACATGGAAAGAAGGGATATACTTGGGAAGACATCTCATCACTTTCACACTTCAAAATCACAATCTTTTGAGGATTTGCAGGAATTATCAGCAAATCAGATGGTTAATCTAGAAAGCCCCAGGTCTGTGATGACTCAGCGCAGTGCTGATAAAGTGATGTTGAAAAGGCGTTCGTCTAGTCAAGTTCTCCCTTctggaagtaaaaaattgtggtGGAAGCTGTTCCTCTGGAGCCACAGGAACATTCATCAACCTTGGGTCAGCAAATCAACTCAATTACATCCTGCAAGTGCCATTTTAAATAGTCAATGCGGATACTCTTCAGATATCCTGGAACCAAAACAAGGTAATACATTGAGACACAGGAGATCACCCTCTCCTACATCATCTTCTGGGGAGTACTTTAGCAAAAGTGGCAAGGATAAAACCATTGATAGTCCAAGGTGGAGCAGATTTCACAAAGAGAAAAACTTCGATTTTCAGACACAGAACCAATGGGTAGCTTTCTCAACAGAATCATCCTCTTTGAACAGAGTGGATGAGTGGGTGAAAGATCTTGAAAATCAGCACCCACCTTCTGAGGAGGATTTTGCTGATGACAATATTGAAAACACTGTCTTGACACCTCTGGATGCTGATAGATTAATAGCAAGAAGCACAACTCAGTTGACTCGACCTCAAGATGGCAATCTTTCAAAGGATATTTTGTACGCAAATAGCGTGGTCCAATCTCTGAATCCAGCCTCAACTGCAGCTCATATATCTGGTATTGGTATAAAAGCCATCCCCGCAATTACACACTTCTCCAGTCTTCGTTCTGTGAATTTGTCGAACAATTTCATCGCTCATATAACACCTGGATTTCTCCCAAAGGGTCTTCATACACTTAATTTGTCAAGAAACAAGATCAGCACCATTGAGGGCCTCCGAGAATTAACCCGATTGCGGGTACTTGACCTAAGTTATAATCGCATCTCAAGAATTGGACAAGGGCTATCAAATTGTACACCAGTCAAAGAGCTATATCTTGCGGGAAACAAGATAAGTGATGTTGAGGGGCTACACAGGTTATTGAAGCTAACTGTTCTGGACTTAAGCTTTAACAAGATCACAACAACAAAGGCATTAGGCCAGCTTGTAGCTAACTACAACTCACTTCAGGCCTTGAATCTGATAGGAAATCCAATTCAAAGCAACATAAGTGATGAGCAGCTGCGCAAAGCAGTTTGTGGTCTACTTCCAAAGCTAGTGTACCTGAACAAGGAATCCATCAAGCCTCAAAGGGCACGGGAGATGCTCACTGATAGTGTTGCCAAAGCTGCACTTGGAAACAGCAGCCGGACCCCCACCAGAAGAGCACTGAAGAAAGGTGGCCAAGGAGGATCAAGTTCCTCCAGTGTGCATAGAAGCAGCACTAGTGTAGCTCAGAAAAGCAGGCACAGATCAAAAAGCCAAACTAAACATCATTAG 2001 0.4253 MAMCRCVSVLIGRKDKIKGIEGSSKGDLKKIHATKVQQPTILSKSRDIKPDATHDVTTCGTQMNSRCNVKATSLESHAKSEVEEAYEGEDEHEDSPSIKREFSDFDLQVHEPVASKGGCDATGKGMNSPILYKEQANIQLEDRDKKSVDLFLSGHVSDPGMGRSNFWASPQLKRSCSNMERRDILGKTSHHFHTSKSQSFEDLQELSANQMVNLESPRSVMTQRSADKVMLKRRSSSQVLPSGSKKLWWKLFLWSHRNIHQPWVSKSTQLHPASAILNSQCGYSSDILEPKQGNTLRHRRSPSPTSSSGEYFSKSGKDKTIDSPRWSRFHKEKNFDFQTQNQWVAFSTESSSLNRVDEWVKDLENQHPPSEEDFADDNIENTVLTPLDADRLIARSTTQLTRPQDGNLSKDILYANSVVQSLNPASTAAHISGIGIKAIPAITHFSSLRSVNLSNNFIAHITPGFLPKGLHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTPVKELYLAGNKISDVEGLHRLLKLTVLDLSFNKITTTKALGQLVANYNSLQALNLIGNPIQSNISDEQLRKAVCGLLPKLVYLNKESIKPQRAREMLTDSVAKAALGNSSRTPTRRALKKGGQGGSSSSSVHRSSTSVAQKSRHRSKSQTKHH 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02132 666 MobiDBLite consensus disorder prediction 617 666 - -
Tsu03g02132 666 MobiDBLite consensus disorder prediction 74 96 - -
Tsu03g02132 666 ProSiteProfiles Leucine-rich repeat profile. 469 490 IPR001611 GO:0005515
Tsu03g02132 666 SMART LRR_typ_2 445 467 IPR003591 -
Tsu03g02132 666 SMART LRR_typ_2 489 512 IPR003591 -
Tsu03g02132 666 SMART LRR_typ_2 534 556 IPR003591 -
Tsu03g02132 666 SUPERFAMILY Outer arm dynein light chain 1 437 600 - -
Tsu03g02132 666 Pfam Leucine Rich repeat 536 548 IPR001611 GO:0005515
Tsu03g02132 666 Pfam Leucine rich repeat 447 502 IPR001611 GO:0005515
Tsu03g02132 666 PANTHER NISCHARIN RELATED 4 665 - -
Tsu03g02132 666 Gene3D Ribonuclease Inhibitor 381 508 IPR032675 -
Tsu03g02132 666 MobiDBLite consensus disorder prediction 288 325 - -
Tsu03g02132 666 ProSiteProfiles Leucine-rich repeat profile. 514 535 IPR001611 GO:0005515
Tsu03g02132 666 SMART LRR_sd22_2 489 511 - -
Tsu03g02132 666 SMART LRR_sd22_2 467 488 - -
Tsu03g02132 666 SMART LRR_sd22_2 512 533 - -
Tsu03g02132 666 SMART LRR_sd22_2 534 555 - -
Tsu03g02132 666 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 4 665 - -
Tsu03g02132 666 MobiDBLite consensus disorder prediction 651 666 - -
Tsu03g02132 666 MobiDBLite consensus disorder prediction 617 650 - -
Tsu03g02132 666 Gene3D Ribonuclease Inhibitor 509 607 IPR032675 -
Tsu03g02132 666 ProSiteProfiles Leucine-rich repeat profile. 536 557 IPR001611 GO:0005515
Tsu03g02132 666 ProSiteProfiles Leucine-rich repeat profile. 491 513 IPR001611 GO:0005515
Tsu03g02132 666 MobiDBLite consensus disorder prediction 288 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02132 Tsu-Chr3 22711676 22713957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02132 440 566 Receptor kinase-like Gene Family AT4G08850 33.333 8.09e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02132 - - cam:101493323 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02497 05 33955054 33961511 Tsu03g02132 03 22711676 22713957 PCT