Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu05g02116 | ATGGAGGATGAGGAGACTAATGAGGCCAGTCCTCGAGCTGTTGGGAAGCTAGAAGGAGATGCTTTTGTCGTTCAAAATGAGGATTGGGAAAAACAATCAGAAGGGGGGGGAATGCCAAATATTGGCCATGATGATACCGAGTTTTGCAACGAAAAAAATGATGTATCATCAGACTCGTTAAGTTCTCATGATGTTGAGAATAAGGAAGGAGATGCTTATGTTGTTCAGAATGAAGATCACGAAGAATCAAAACGGGCAAAAAATTCAAACGGggagaattttgaaaatatggGTTGTGATGGTCCCGGATTTGAGGAAAATCTAGATGATATATTAGATAATATATACGGGATGATAGATGTAGAGTCTAATACTCCCAAGAGGAAGATAGACAATGTGATTGAAAAATGGGAATTGTCTCATAGGGTAGGTGTGAATAGGTATTTGCAGTGTGGAACTCAGGAAGAAAACATGGAGACCAGTTGTAGTTCTGTTCCCAATGAAATGTTTCAAAAAGAGAAGGTTGAAAATGGAACTATAGGTTCATATTCACCACAAATGAATCGAAAGATAGATAACACTTCAATTGAGGACAATACTATGAATCCTAAAGTTGATGACATAGATACTCCACATGTGGTTGAGAAGGCTGTAGCGCTTAAAAACTTTGTGAGAGAGAAAAGTATGGTAGCGGTCTCCACTCTGCTGCGTCGATTTTCTATAAAATTTGATGAAGGTTATGTGTGTAATTCTGATAATAAACGTCATAATGTTTCAGATTTATTAGGAGACAGTGAATCCAAAGAGGTTTCTGAGAAAACGACTTATCAGATGGATGATGAACCGGTAACTGAAGGTCCTCTGCGACCCATAGCCATGAAAGGAAGGATTATACTGTACACGAGATTAGGTTGCCGAGAATCAAAAGAGGTTAGAAGATTTTTGTATATGAAAAGACTTAGATATGTTGAAATCAACATTGATGTGTACCCTAGTAGAAAGATGGAGCTGGAAAAGATTTCTGCATCTACTTCTGTTCCCAAAGTTTTTTTCAATGGAATACTAATAGGAGGCATGAGTGAGTTAAAGACCTTAAATGATTCTGGCaaccttgatgataagattgaaTTCCTGATAACTGAATCACCATCATTTGAAGGACCATTTCCACCACTTTCTGGAGAGGATGATGTGTCCAGTAGTGGGGCAATTGATGAATTGGCCCTAATTGTCCGCAAAATGAAAGAATCTATTGTTGTGAAGGATCGATTTAGCAAATTGAGAAGGTTTACTAATTGCTTTCTTGGCTGTGAAGCTGTGGACTTCTTATCAGAAGATCAATATTTGGAAAGGAAGGAGGCTGTTGAGTTTGGACGAAAGCTTGCTATCAAGCTCTTCTTTCAGCATGTTCTTGATGAGAATCTTTTTGAGGATGGTAATTACTTTTATCGGTTTATGGATGACGATCCAATTGTGGCATCTCAGTGTCAAAATATTCCAAGGGGGATAATTACTGTGAAACCTAAGCCTATCACAGAAATTGCATCAAGGCTGAGATTACTGTCCTATGCAATGTTTGAAGCCTACGCCTCTGAAGATGGACGTCACGTTGATTACAGGAGTATGCATGGAAGTGAAGAATTTGCAAGGTATCTAAGAATCGTAGAAGAGCTACAAAGAGTGGAAATATCTGATTTGTCTAGACAAGATACGATTGCTTTCTTTCTTAATCTGTATAATATGATGACCATCCATGCAATCTTAGTATGGGGTCATCCAGCTGGAGCACTAGAAAGAAGGAAATTGTTTGGAGATTTCAAATATGTTATTGGTGGGTCCGCCTACTCACTTTCAGCTATTCAGAATGGCATTTTGAGGGGGAACCAGCGACAACCATATACCCTTATGAAGCCATTTGGTGTAAAAGATAAACGTTTAAGGGTGGCCCTCTCTTCCCCAGAGCCTCTCATTCATTTTGCTATAGTATGTGGTACTCGATCTGGGCCTCCACTTCGGTGCTATTCTCCTGGAGACATTGACTCGGAATTAATGGATGCAGCTCGTAATTTCCTTATAAATGGTGGCATTTTGATAGATTTTACTACAAAGGTTGCATATGCCAGTAAGATCCTTAAATGGTTCAGTATAGATTTTGGCAAGAATGAGATAGAGGTTATGAAGCATGTATCAATATACTTAGATCCTTCTGAGTCAGAGCTATTGTTTGACTTACTTGCCAGTTCTGAGTTGAAGGTGATATATCAGCCTTATGACTGGGGTTTGAACTGTTAG | 2292 | 0.3839 | MEDEETNEASPRAVGKLEGDAFVVQNEDWEKQSEGGGMPNIGHDDTEFCNEKNDVSSDSLSSHDVENKEGDAYVVQNEDHEESKRAKNSNGENFENMGCDGPGFEENLDDILDNIYGMIDVESNTPKRKIDNVIEKWELSHRVGVNRYLQCGTQEENMETSCSSVPNEMFQKEKVENGTIGSYSPQMNRKIDNTSIEDNTMNPKVDDIDTPHVVEKAVALKNFVREKSMVAVSTLLRRFSIKFDEGYVCNSDNKRHNVSDLLGDSESKEVSEKTTYQMDDEPVTEGPLRPIAMKGRIILYTRLGCRESKEVRRFLYMKRLRYVEINIDVYPSRKMELEKISASTSVPKVFFNGILIGGMSELKTLNDSGNLDDKIEFLITESPSFEGPFPPLSGEDDVSSSGAIDELALIVRKMKESIVVKDRFSKLRRFTNCFLGCEAVDFLSEDQYLERKEAVEFGRKLAIKLFFQHVLDENLFEDGNYFYRFMDDDPIVASQCQNIPRGIITVKPKPITEIASRLRLLSYAMFEAYASEDGRHVDYRSMHGSEEFARYLRIVEELQRVEISDLSRQDTIAFFLNLYNMMTIHAILVWGHPAGALERRKLFGDFKYVIGGSAYSLSAIQNGILRGNQRQPYTLMKPFGVKDKRLRVALSSPEPLIHFAIVCGTRSGPPLRCYSPGDIDSELMDAARNFLINGGILIDFTTKVAYASKILKWFSIDFGKNEIEVMKHVSIYLDPSESELLFDLLASSELKVIYQPYDWGLNC | 763 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu05g02116 | 763 | MobiDBLite | consensus disorder prediction | 25 | 96 | - | - | |
| Tsu05g02116 | 763 | Pfam | Protein of unknown function, DUF547 | 564 | 691 | IPR006869 | - | |
| Tsu05g02116 | 763 | SUPERFAMILY | "Winged helix" DNA-binding domain | 406 | 495 | IPR036390 | - | |
| Tsu05g02116 | 763 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Tsu05g02116 | 763 | PANTHER | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE | 7 | 762 | - | - | |
| Tsu05g02116 | 763 | Gene3D | Glutaredoxin | 292 | 377 | - | - | |
| Tsu05g02116 | 763 | Gene3D | - | 399 | 492 | IPR036388 | - | |
| Tsu05g02116 | 763 | MobiDBLite | consensus disorder prediction | 264 | 279 | - | - | |
| Tsu05g02116 | 763 | Pfam | Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) | 418 | 485 | IPR000591 | GO:0035556 | |
| Tsu05g02116 | 763 | CDD | DEP | 406 | 484 | - | - | |
| Tsu05g02116 | 763 | PANTHER | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE | 7 | 762 | - | - | |
| Tsu05g02116 | 763 | MobiDBLite | consensus disorder prediction | 45 | 89 | - | - | |
| Tsu05g02116 | 763 | ProSiteProfiles | DEP domain profile. | 414 | 487 | IPR000591 | GO:0035556 | |
| Tsu05g02116 | 763 | SUPERFAMILY | Thioredoxin-like | 293 | 375 | IPR036249 | - | |
| Tsu05g02116 | 763 | ProSiteProfiles | Glutaredoxin domain profile. | 285 | 382 | - | - | |
| Tsu05g02116 | 763 | Pfam | Glutaredoxin | 297 | 354 | IPR002109 | - | |
| Tsu05g02116 | 763 | MobiDBLite | consensus disorder prediction | 264 | 285 | - | - | |
| Tsu05g02116 | 763 | SMART | DEP_3 | 414 | 487 | IPR000591 | GO:0035556 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu05g02116 | Tsu-Chr5 | 26026033 | 26036546 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu05g02116 | - | - | mtr:MTR_5g061340 | 985.326 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu05g02116 | 05 | 26026033 | 26036546 | Tsu05g02116 | 05 | 26026033 | 26036546 | ECH | |
| Tsu05g02116 | 05 | 26026033 | 26036546 | Tsu03g02056 | 03 | 21662504 | 21668236 | PCT |