Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu03g02056 | ATGGAAAATCCGCATTTGTCGGAGACAAAGGAAGCAAGTTCCCAAGAGGTTGAGAAGCTGCAAGAAGATGCTTCTGCCATTCAGATTGAAGATCAGGAGAAAGAGGCAAAAGTTCAGAATATTGGTCATGACGACACTGAGTTTGACAACAAACTGGATGATATATCGGACGTGATAAAGGACGTCAAAGATGGAACGACTAAGTCTGATACTGATgcagaaataaatgacaatgtCATTGGAGATTCTGGTTTGGCCCAGGCCAAAACTGAAACTGAAGTCAAACATGTTGGGCAAGAGTATTCTGGTGATAAGGTTGAGGCCGGCAGAGATTTTGAACCtaaaagtgaagaaagaaaTCTAGATGATAAATCAGGACAGGATGATTTGGCAAAAGAGGAGAATGTCGCGATAGGCACGGAATCCACAGATATGGATCAGAAGGCGGATGAAATTCCAAACGAGGACAGCAATTTGGACCCTGTATTCGATGGAACAGAGATTCCAGGGATGGAAGCTAACCGGAGCACATCTATCCGTAAGTTGGATGGTGATCAGGACAGTCCTGGTGTGGTTGAGAAGGCAGTAGCTCTTAAAAATCTTGTCAAGGAGAAAAGTGCAGTGGCGGTCTCCACTATGCTGCGCCGCCTTTCTGGAAAAAGTGATGAAGCTGCTGCGGGTAATTTTGATAATGAAGGCAAGGATATTTCAGATATCTCAGAAGTTAATGAAGCCAAATTGGTTTCTGAGAAGCCAGTGGAGAAATCTTCCTGGAATCctttaaattatattaagaaGTCATCTGATGTTGATGCGGAAAACAAAACTGGCCAGAAGGATTCGATAACAGATGGTCCACCACTACCAATAGCCTTGAAAGGAAGGATTATATTGTACACAAAACTAGGGTGCCAAGAATCTAAAATATTTAGGCTATTTTTACGCACAAAAAGGCTTAGGTATGTAGAAATCAATATAGATGTATACCCCGGTAGAAAGATGGAGCTGGAGAAGATTTCTGGATCTACTTCTGTTCCCAAGTTGTTTTTCAATGAAATCTGTATTGGAGGCTTGAGTGAGCTAAAAAACTTGGATGAGTCTGGAAAGCTTGACGAGAAGATTGACTTTCTTATTACTGAAGCACCATTATTTGAAACTCCATCACCACCTTTTTCAGGAGAGGATGATATTTCCAGCACTGGAGCAGTTGATGAATTGGCTCTTATTGCTCGCAAAATGAAAGAGTCTATTATTGTGAAGGACAGGTTGTACAAAATGCGCAGGTTCACCAACTGTTTTCTGGGCTCAGATGCTTTAGACTTCTTATCAGAAGATCAATATTTGGAAAGGCAAGAGGCTGTTGAATTTGCTCGAAAGCTTGCCAGCAAACTCTTCTTTCGACATGTTCTTGAtGAGAATCTATTTGAGGATGGTAATCACGTGTATCGATTTTTGGATGATGATCCAATTGTGGTGTCACAATGTCACAACATTCCTAAGGGGATTATTACTGTCAATCCAAAGCCTATAGCAGAAATTGCATCAAGGCTGAGGTTTCTGGCCTCTGCAATGTTTGAAGCCTATGCTTTTGAAGATGGACGCCGTCTTGATTATACGAGTATACATGGAAGTGAGGAGTTCGCAAGGTATCTGAGAATAGTTGAAGAGCTCCAAAGAGTGGAAATATGGGACATATCTAGAGAAGAGAAGCTTGCTTTCTTTATTAATCTTTATAATATGATGGCCATCCATGCAATCTCAATATTGGGTCATCCAGATGGAACATTAGAAAGAAGGAAATTATTTGGAGAGTTCAAATATGTTATCGGCGGCTCCACATACTCACTTTCAGCTATTCAAAATGGCATATTGAGGGGAAACCAGCGACCTCCATATAACCTTAAGAAGCCATTTGGTGCAAAAGATAAACGCTCAAAGGTGGCACTCCCTTACCCTGAGCCTCTGATTCATTTTGCTTTGGTAAGTGGCACCCGATCTGGGCCTGCACTTCGGTGCTACTCTCCtggaaaaattgatgaagaaTTATTGGATGCAGCTCGTAACTTCCTGAGAAGTGGAGGCCTTGAAATTGATTTGACTGCGAAGGTTGCACATGCTAGTAAGATTCTTAAATGGTATAGCATAGATTTTGGCAAGAGCGAGGTTGAGGTGATCAGGCATGTGTCAAACTACTTAGATCCAGCTGACTCCGAAATATTATTGGACCTGCTTGCCTCTTCTGAGTTGAAGGTGGTATATCAGCCTTATGACTGGGGTTTGAACTGCTAG | 2289 | 0.4089 | MENPHLSETKEASSQEVEKLQEDASAIQIEDQEKEAKVQNIGHDDTEFDNKLDDISDVIKDVKDGTTKSDTDAEINDNVIGDSGLAQAKTETEVKHVGQEYSGDKVEAGRDFEPKSEERNLDDKSGQDDLAKEENVAIGTESTDMDQKADEIPNEDSNLDPVFDGTEIPGMEANRSTSIRKLDGDQDSPGVVEKAVALKNLVKEKSAVAVSTMLRRLSGKSDEAAAGNFDNEGKDISDISEVNEAKLVSEKPVEKSSWNPLNYIKKSSDVDAENKTGQKDSITDGPPLPIALKGRIILYTKLGCQESKIFRLFLRTKRLRYVEINIDVYPGRKMELEKISGSTSVPKLFFNEICIGGLSELKNLDESGKLDEKIDFLITEAPLFETPSPPFSGEDDISSTGAVDELALIARKMKESIIVKDRLYKMRRFTNCFLGSDALDFLSEDQYLERQEAVEFARKLASKLFFRHVLDENLFEDGNHVYRFLDDDPIVVSQCHNIPKGIITVNPKPIAEIASRLRFLASAMFEAYAFEDGRRLDYTSIHGSEEFARYLRIVEELQRVEIWDISREEKLAFFINLYNMMAIHAISILGHPDGTLERRKLFGEFKYVIGGSTYSLSAIQNGILRGNQRPPYNLKKPFGAKDKRSKVALPYPEPLIHFALVSGTRSGPALRCYSPGKIDEELLDAARNFLRSGGLEIDLTAKVAHASKILKWYSIDFGKSEVEVIRHVSNYLDPADSEILLDLLASSELKVVYQPYDWGLNC | 762 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu03g02056 | 762 | Pfam | Glutaredoxin | 296 | 352 | IPR002109 | - | |
| Tsu03g02056 | 762 | MobiDBLite | consensus disorder prediction | 64 | 188 | - | - | |
| Tsu03g02056 | 762 | CDD | DEP | 405 | 483 | - | - | |
| Tsu03g02056 | 762 | SUPERFAMILY | "Winged helix" DNA-binding domain | 406 | 490 | IPR036390 | - | |
| Tsu03g02056 | 762 | PANTHER | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE | 1 | 761 | - | - | |
| Tsu03g02056 | 762 | MobiDBLite | consensus disorder prediction | 93 | 135 | - | - | |
| Tsu03g02056 | 762 | Pfam | Protein of unknown function, DUF547 | 565 | 690 | IPR006869 | - | |
| Tsu03g02056 | 762 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Tsu03g02056 | 762 | Gene3D | Glutaredoxin | 292 | 376 | - | - | |
| Tsu03g02056 | 762 | ProSiteProfiles | DEP domain profile. | 413 | 486 | IPR000591 | GO:0035556 | |
| Tsu03g02056 | 762 | SMART | DEP_3 | 413 | 486 | IPR000591 | GO:0035556 | |
| Tsu03g02056 | 762 | Pfam | Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) | 418 | 484 | IPR000591 | GO:0035556 | |
| Tsu03g02056 | 762 | Gene3D | - | 396 | 490 | IPR036388 | - | |
| Tsu03g02056 | 762 | Coils | Coil | 10 | 37 | - | - | |
| Tsu03g02056 | 762 | PANTHER | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE | 1 | 761 | - | - | |
| Tsu03g02056 | 762 | MobiDBLite | consensus disorder prediction | 30 | 49 | - | - | |
| Tsu03g02056 | 762 | ProSiteProfiles | Glutaredoxin domain profile. | 284 | 381 | - | - | |
| Tsu03g02056 | 762 | SUPERFAMILY | Thioredoxin-like | 294 | 375 | IPR036249 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu03g02056 | Tsu-Chr3 | 21662504 | 21668236 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu03g02056 | - | - | ccaj:109797380 | 1118.22 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu03g02056 | 03 | 21662504 | 21668236 | Tsu03g02056 | 03 | 21662504 | 21668236 | ECH | |
| Tsu05g02116 | 05 | 26026033 | 26036546 | Tsu03g02056 | 03 | 21662504 | 21668236 | PCT |