Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01881 ATGCTTATGATCCTGCGATATGGGGTCATGAAAAATCCCATTGGTGAAGGTTATTTGACTATACCTGTCTTAATTAATGGAACTAATCCTCTAGAGTGGATAAATCCTGCGATTCCACCTGCTATTCAAAATCCAGCTGGTACTACGCAAGTTATTTCTGCGGACATTTTAGTATCTAGCCTCTTTGCCAAGAACAACTTTTCCAAACAAGAGCAACAAACTCTGCAGACATGGAACCACTTGAAACACTTAATTGATCATGTTCAGGGTTTACCTAGTGCAGCAGAAGCTATCAAGGAGGCTGCGAGTGTGTGGAATAGCCTTGTTTCCTCAGTTGAAGAGCAAAGGCAAGGTCATGCAAATGATAGTTCAAGAGCAAAAGAGAAACAATGTCCCCATTTTCTTAATAAGATGAATTCTACAGAACTTGGTAATAGTAGTAGTTACAGACTGCAAGTTCCTTGTGGTCTGACACAAGGTTCTTCCATTACTGTAATTGGCATTCCAAATGGTATTCTAGGTAATTTCCGGATAGACTTGACTGGAGATTCAATCCCTGGGGAGCCTGATCCCCCAGTTATTTTGCACTATAATGTTAGGCTTCATGGTGATAAAATCACTGAAGATCCAGTAATTGTTCAAAACACCTGGACAGTAGCTCATGATTGGGGTGAAGAGGAACGCTGTCCATCCCCTGAGTCTGAAGAGGTTAAAAAAGTTGATGAGTTGGAACAGTGCAATAAGATTGTAGGGAAGAACATTAGCCAACTTTACACGGGCGGCATGCATTCCCATACTCCAAGACAAATTTCAGCAACTGAAAAGCAATTAATTAAGAGAAAATACTTTCCTTTTAAGCAAGGTTACCCCTTTGTAGCAACTATTAGAGTGGGATCAGAGGGAATCCAGATGACAGTTGATGGAAAGCACATAACTTCATTTGCTTTTCGTGAGACTCTGGAGCCATGGCTTGTCAGTGAGATAAAAATTTCAGGGGATATAAAATTAGAATCTATTCTTGCAAGTGGTCTGCCTACATCAGAGGATTCAGAGCATATTGTTGATCTGGAATTATTGAAGTCAAGTCCTTTATCTGCACAGGCCCCATTGGATCTCTTCATTGGTGTTTTCTCTACAGCTAACAATTTTAAGCGACGGATGGCTGTTAGAAGAACCTGGATGCAGTACAATGCAGTTAGATCAAATACAACAGCTGTGCGCTTCTTTGTTGGTTTGCATAAAAGCCAAATAGTTAATGAAGAACTGTGGAAAGAAGCACAAACGTATGGAGACATACAGTTGATGCCATTTGTTGACTACTATAGCCTCATCACCTGGAAATCTTTAGCAATCTGCATTTTTGGGACACAGGTTGTTTCAGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTTCGTGTAGATGAAGTGCTAGGCTCTTTGCAGAGGATCAATGTGGCTCGTGGGTTACTATATGGACTGATCAATTCAGATTCCCAACCTCATCGAAATCCTGATAGCAAATGGTACATCAGCCAAGAGGAATGGAGCGAAGGAACTTATCCTCCATGGGCACATGGTCCCGGGTATGTGGTCTCACATGACATAGCAAAGACAGTGTACAAGAAATACAGAGAGAATCATTTGAAgATGTTTAAACTAGAAGATGTTGCAATGGGAATCTGGATCGCAGACATGAAGAAGGAAGGTCTAGAAGTTCGATACGAGAATGAAGCCAGAGTTTATAATGAGGGTTGCAAGGATGGTTATGTGGTTGCTCATTATCAAGGTCCTAGGGAGATGCTCTGTTTGTGGCACAAACTTCAGGAATTAAAACGCGCAACTTGTTGCAGTGATAGAAGGAGACTACTGAGTACTGTTTGA 1887 0.4107 MLMILRYGVMKNPIGEGYLTIPVLINGTNPLEWINPAIPPAIQNPAGTTQVISADILVSSLFAKNNFSKQEQQTLQTWNHLKHLIDHVQGLPSAAEAIKEAASVWNSLVSSVEEQRQGHANDSSRAKEKQCPHFLNKMNSTELGNSSSYRLQVPCGLTQGSSITVIGIPNGILGNFRIDLTGDSIPGEPDPPVILHYNVRLHGDKITEDPVIVQNTWTVAHDWGEEERCPSPESEEVKKVDELEQCNKIVGKNISQLYTGGMHSHTPRQISATEKQLIKRKYFPFKQGYPFVATIRVGSEGIQMTVDGKHITSFAFRETLEPWLVSEIKISGDIKLESILASGLPTSEDSEHIVDLELLKSSPLSAQAPLDLFIGVFSTANNFKRRMAVRRTWMQYNAVRSNTTAVRFFVGLHKSQIVNEELWKEAQTYGDIQLMPFVDYYSLITWKSLAICIFGTQVVSAKFVMKTDDDAFVRVDEVLGSLQRINVARGLLYGLINSDSQPHRNPDSKWYISQEEWSEGTYPPWAHGPGYVVSHDIAKTVYKKYRENHLKMFKLEDVAMGIWIADMKKEGLEVRYENEARVYNEGCKDGYVVAHYQGPREMLCLWHKLQELKRATCCSDRRRLLSTV 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01881 628 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 51 612 IPR002659 GO:0006486|GO:0016020|GO:0016758
Tsu05g01881 628 Gene3D - 143 341 - -
Tsu05g01881 628 SMART Gal_bind_lectin_2 153 341 IPR001079 GO:0030246
Tsu05g01881 628 Gene3D - 365 598 - -
Tsu05g01881 628 SMART galectin_3 149 342 IPR001079 GO:0030246
Tsu05g01881 628 Pfam Galactoside-binding lectin 149 340 IPR001079 GO:0030246
Tsu05g01881 628 PANTHER - 51 612 - -
Tsu05g01881 628 Pfam Galactosyltransferase 384 568 IPR002659 GO:0006486|GO:0016020|GO:0016758
Tsu05g01881 628 SUPERFAMILY Concanavalin A-like lectins/glucanases 149 342 IPR013320 -
Tsu05g01881 628 CDD GLECT 149 339 IPR001079 GO:0030246
Tsu05g01881 628 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 149 342 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01881 Tsu-Chr5 20614937 20618424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01881 1 620 Glycosyltransferase AT1G26810 63.217 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01881 K14413 - gmx:100780913 1083.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01881 05 20614937 20618424 Tsu05g01881 05 20614937 20618424 ECH
Tsu04g04366 04 51563932 51568594 Tsu05g01881 05 20614937 20618424 PCT