Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04366 ATGATGATGAAACCTCTATATTTAGTTCAAGgtttaatgaaaatgaagaagtgGTATGGAGGCTTGTTAATCCTAGCTTTAGGTATGATGTTGTTTCTACTGTATAATCTTAAAGGAATTCAGCCACAAAAGCATTCAACAAAACAATCTGCATATAGTTTTTTCCATAGCCATTCGCCACCAAATGATTCTATTAAAGGAAGCAACAATGTTGCAGTAGTAACCACTTCCGATGAAGAACAGAAAATTGTACCAGAACCAACAAAAAGGCCACATTTGATACATGTTGCAGGGCTTGATGATCTGTATGACACAAAAAATTTATCCGAAGGAGTGATGAATGTTGTACTTGTTTGGACACATTTACGTTTGTTGCTTTCGAGGTCGGATGCTTTGCCTGAAATAGCTCAAGGAGTTAAAGAGGCTTCTGTAGCATGGAAAGAGTTGATGTCCACTGTTGAAAGTGAAAAAGCGTCTAATATTAGTAAGATAGACAGCCCAGAGAATCTAAACTGTCCTTTCTCTGTGATGATACTTAGCAAGACGATAGCAGATAGTGGAATCACTCTGGATCTCCCTTGTGGTTTGGTTTTAGATTCTTCTATTACACTGATTGGTATCCCTAATGGACAAAACAGTAGCTTTCAGATTGACCTAGCTGGACAGGAGCTAGAAGAGGAACCAAATCCTCCAATTATCTTGCATTATAATGTGAATCTTCCTGGGGATAACATGACAGAGGAACCGTATATTGTTCAAAATACATGGACTAATGATTTTGGGTGGGGGAAAGAGGAAAGATGTCCTGCTCGTAGTTCTGCTAACATCCGCAAAGTTGATGAGCTTGTTCTCTGCAATGTACAAGCTGTCAGAAATAACGACGAGAATGAAAATGTCGGTCCTAGTGATATACCTTCTAATATTTCCTCAGAAAGTGCACATAGAACTGCTAATTTCCCTTTTTCTGAGGGTAATCCTTTCACTGCCACATTGTGGGTTGGTTCAGAGGGATTTCAtatgactgtgaatggaaggcATGAAACATCTTTTGCATATAGGGAGAAGCTTGAACCATGGTTAGTCAGCACAGTTAAAGTAGCAGGCAGTTTAAGTCTCTTATCAGTTCTTGCTAAAGGTTTACCCGTCACCGAAGATAATGATATAGTTGTAGATGTTGAGAACCTTAAGGCTCCTTCTATCCCTAGGAAAAGGCTTGTTTTGTTGATCGGAGTATTCTCTACCGGAAATAACTTTGAGCGCCGAATGGCGCTGAGGAGGTCTTGGATGCAGTATGAGGCTGTACGTTCTGGTGAAGTTGCTGTCAGATTTTTTATCGGGCTTCATAAGAACAATAGAGTTAATTTGGAGTTATGGAGAGAAGCTCAAGCATATGGAGATATCCAGTTAATGccttttgttgattattatagTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGGACAAAAATCATCCCTTCTAAATACATAATGAAAACGGACGATGATGCTTTCGTAAGGATTGATGAAGTTCTTTCCACCCTAAAAGGGAAGCCGTCTGAAGGCCTCTTGTACGGTCTAATATCTTCTAAATCATCTCCTGATAGGGATAAGGACAGCAAGTGGTACATCAGTGATGCGGAATGGCCACATGATACATACCCACCATGGGCACATGGCCCTGGCTACGTCATCTCTCGCGACATTGCGAAATTTGTTGTCTCTGGTCACCAGGAAAGAAAACTCAAGTTCTTTAAATTAGAAGATGTTGCCATGGGCATATGGATTGAACAGTTTAAGAATAGTGGTAAAGAAGTGCACTATGAGAATGATGAGAGGTTTTTCAATGCTGGATGTGACTCAAATTATGTACTTGCACATTATCAAAACCCAAGGATGGTGCTATGCCTGTGGGAGAAACTGCAGAAAGAACACAAGCCAGAATGTTGTGAATAG 1962 0.3884 MMMKPLYLVQGLMKMKKWYGGLLILALGMMLFLLYNLKGIQPQKHSTKQSAYSFFHSHSPPNDSIKGSNNVAVVTTSDEEQKIVPEPTKRPHLIHVAGLDDLYDTKNLSEGVMNVVLVWTHLRLLLSRSDALPEIAQGVKEASVAWKELMSTVESEKASNISKIDSPENLNCPFSVMILSKTIADSGITLDLPCGLVLDSSITLIGIPNGQNSSFQIDLAGQELEEEPNPPIILHYNVNLPGDNMTEEPYIVQNTWTNDFGWGKEERCPARSSANIRKVDELVLCNVQAVRNNDENENVGPSDIPSNISSESAHRTANFPFSEGNPFTATLWVGSEGFHMTVNGRHETSFAYREKLEPWLVSTVKVAGSLSLLSVLAKGLPVTEDNDIVVDVENLKAPSIPRKRLVLLIGVFSTGNNFERRMALRRSWMQYEAVRSGEVAVRFFIGLHKNNRVNLELWREAQAYGDIQLMPFVDYYSLISLKTIAICIMGTKIIPSKYIMKTDDDAFVRIDEVLSTLKGKPSEGLLYGLISSKSSPDRDKDSKWYISDAEWPHDTYPPWAHGPGYVISRDIAKFVVSGHQERKLKFFKLEDVAMGIWIEQFKNSGKEVHYENDERFFNAGCDSNYVLAHYQNPRMVLCLWEKLQKEHKPECCE 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04366 653 Pfam Galactoside-binding lectin 189 376 IPR001079 GO:0030246
Tsu04g04366 653 SMART Gal_bind_lectin_2 192 377 IPR001079 GO:0030246
Tsu04g04366 653 Pfam Galactosyltransferase 419 602 IPR002659 GO:0006486|GO:0016020|GO:0016758
Tsu04g04366 653 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 188 378 IPR001079 GO:0030246
Tsu04g04366 653 SMART galectin_3 186 378 IPR001079 GO:0030246
Tsu04g04366 653 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 104 645 IPR002659 GO:0006486|GO:0016020|GO:0016758
Tsu04g04366 653 SUPERFAMILY Concanavalin A-like lectins/glucanases 189 378 IPR013320 -
Tsu04g04366 653 CDD GLECT 189 375 IPR001079 GO:0030246
Tsu04g04366 653 Gene3D - 186 377 - -
Tsu04g04366 653 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE GALT1 104 645 - -
Tsu04g04366 653 Gene3D - 401 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04366 Tsu-Chr4 51563932 51568594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04366 13 653 Glycosyltransferase AT3G06440 52.174 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04366 K20843 - gmx:100816729 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04366 04 51563932 51568594 Tsu04g04366 04 51563932 51568594 ECH
Tsu04g04366 04 51563932 51568594 Tsu05g01881 05 20614937 20618424 PCT