Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01869 ATGATAGCACCCATTCTCCAATTGACTTcattttctccaacaaaacccaacacacaaacaaaaaaaacacttgcTCCTTTACCTTATGTCCTTTCTCTCATACCCAAATGCACTACTCTCACAGACCTGAAGCAAATTCAAGCTTATGCCATCAAAACCCATCTCCAAAACAACACCAATGTTAACACAAAGTTCATAAATTTATGTACTTCAAACCCAACTAAAGCTTCTATGGAACATGCACACAACCTGTTTGATCAAATTACTCAACCAAATATTGTTCTTTTTAACACCATGGCACGTGGGTATGCTCGCTCTAACGACCCTCTTAGAGCGATGATTTTGTTTTCTCGCGTGCTGTGGTTTGACCTTGTTCCGGATGATTACACATTTTCTTCGCTTCTTAAGGCTTGTTCGAAGGTTAAGGCTTTGAAGGAAGGGAAACAGCTTCATTGTTTTGCTTTGAAACTTGGGGTTAGTGATGACATTTATGTTGTTCCGACGCTTATTAATATGTATACTTCTTGTGGCGAAATTGATGATGCTAGAAGGGTTTTTGATAAGATTGATGAACCTTGTGTTGTTGCATATAATGCGATTATTACGAGTTTGGCTAGGAATAGTCAACCTAATGAGGCGTTGGCTTTGTTTAGAGAGTTGCAGGAGAGTGGTCTTAAGCCAACTGATGTTACCATGCTTGTTGCGCTTTCGTCCTGCGCTATGCTTGGATCGTTGGACTTGGGGAGGTGGATACACGAGTATGTTAAGAAGTACGGGTTTGATCGATACGTGAAGGTAAATACAGCTCTTATAGATATGTATGCTAAATGTGGAAGTTTGGATGATGCTGTTAATGTTTTTAGGGGTATGCCTAAGAGAGATACTCAGACGTGGTCGACAATTATCATTGCTTATGCAACACATGGGGATGGTTTCCAAGCCATATCGGTgttgaaagaaatgaagaagGAAAAGGTGCAGCCTGATGAGATAACTTTTTTAGGTATATTGTATGCATGTAGTCACAATGGATTGGTAGAAGAAGGTTTTGAGTATTTTCATAGTATGACAAATGAGTATGGGATTGTTCCTAGTATCAAGCATTATGGGTGTATGGTGGATTTGCTTGGTCGAGCTGGACGGTTGGATGAAGCCTATAAATTCATAGATGAATTACCAATCAAGCCGACACCAATTTTGTGGCGGACATTGCTATCTGCTTGTAGTAGTCATGGGAATGTTGAAATGGGAAAGCAAGTAATGGAGAGAATCTCTGAATTGGATGATTCCCATGGTGgagattatgttattttgtcgaACTTGTGTGCAAGATATGGAAAATGGGATGATGTGAATCACTTGAGGAAAATGATGATAGACAAAGGAGCTGTAAAAATTCCTGGCTGTAGCTCTATAGAGGTCAATAATGTTGTGCATGAGTTCTTCGCCGGGGATGGAGTTCATTCCATTTCTACCACGTTGCACCGTGCACTTGACGAATTGATAAAGCAATTGAAGTTGGCTGGGTATGTAGCTGACACATCACTAGTTTTTCATGCAGACATGGAAgataaagagaaagaaattatTCTTCGATATCACAGTGAGAAATTGGCCATTACTTTTGGACTTCTGAATACACCCCCCGGAACAACAATTCGTGTCGTCAAGAACCTTAGAGTCTGTGGTGATTGCCATAATGCTGCTAAATTTATATCATTGATTTTTGGTAGGCAAATTATTCTCAGAGATGTTCAGAGGTTTCACCATTTCAAAGATGGGAAATGCTCTTGTGGTGATTACTGGTAA 1809 0.3798 MIAPILQLTSFSPTKPNTQTKKTLAPLPYVLSLIPKCTTLTDLKQIQAYAIKTHLQNNTNVNTKFINLCTSNPTKASMEHAHNLFDQITQPNIVLFNTMARGYARSNDPLRAMILFSRVLWFDLVPDDYTFSSLLKACSKVKALKEGKQLHCFALKLGVSDDIYVVPTLINMYTSCGEIDDARRVFDKIDEPCVVAYNAIITSLARNSQPNEALALFRELQESGLKPTDVTMLVALSSCAMLGSLDLGRWIHEYVKKYGFDRYVKVNTALIDMYAKCGSLDDAVNVFRGMPKRDTQTWSTIIIAYATHGDGFQAISVLKEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHSMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSSHGNVEMGKQVMERISELDDSHGGDYVILSNLCARYGKWDDVNHLRKMMIDKGAVKIPGCSSIEVNNVVHEFFAGDGVHSISTTLHRALDELIKQLKLAGYVADTSLVFHADMEDKEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01869 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Tsu05g01869 602 SUPERFAMILY TPR-like 117 288 IPR011990 GO:0005515
Tsu05g01869 602 Pfam PPR repeat 94 118 IPR002885 -
Tsu05g01869 602 Pfam PPR repeat 369 392 IPR002885 -
Tsu05g01869 602 Pfam PPR repeat 168 189 IPR002885 -
Tsu05g01869 602 Pfam PPR repeat 268 293 IPR002885 -
Tsu05g01869 602 Pfam E motif 411 473 IPR046848 -
Tsu05g01869 602 Gene3D Tetratricopeptide repeat domain 344 506 IPR011990 GO:0005515
Tsu05g01869 602 Gene3D Tetratricopeptide repeat domain 36 192 IPR011990 GO:0005515
Tsu05g01869 602 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 588 - -
Tsu05g01869 602 Gene3D Tetratricopeptide repeat domain 232 343 IPR011990 GO:0005515
Tsu05g01869 602 SUPERFAMILY TPR-like 261 432 IPR011990 GO:0005515
Tsu05g01869 602 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Tsu05g01869 602 TIGRFAM PPR: pentatricopeptide repeat domain 268 294 IPR002885 -
Tsu05g01869 602 TIGRFAM PPR: pentatricopeptide repeat domain 332 365 IPR002885 -
Tsu05g01869 602 TIGRFAM PPR: pentatricopeptide repeat domain 195 228 IPR002885 -
Tsu05g01869 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Tsu05g01869 602 Pfam PPR repeat family 294 340 IPR002885 -
Tsu05g01869 602 Pfam PPR repeat family 192 240 IPR002885 -
Tsu05g01869 602 Pfam DYW family of nucleic acid deaminases 509 602 IPR032867 GO:0008270
Tsu05g01869 602 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Tsu05g01869 602 PANTHER BNAA02G26650D PROTEIN 23 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01869 Tsu-Chr5 20402235 20404606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01869 32 602 Glycoside Hydrolase AT3G49170 39.033 1.54e-142 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01869 - - gmx:100817794 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01869 05 20402235 20404606 Tsu05g01869 05 20402235 20404606 ECH
Tsu05g01869 05 20402235 20404606 Tsu04g03698 04 46050506 46052374 PCT