Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03698 ATGTCACCACTTTGGTCTTCATGCTCAAGCCGTTCTCTTCTCGCCGCAACCAATCTTCAGTTCCCCTCTTATTTCACTGCCGCCATTTCCATTGCCACTCCACAAAATCAATCAACACACATTCCATTTTTCAACAAAGAATCAATAATTTCTACCATAAAATCTATTTCCAATAAGACCCATTTGCTCCAAATCCATGCTCACATTCTCAGAACAACCCTCATTCAAGACCCTGCAGTTTCTCATCACTTCTTATGCCGTGTAGCTCTCTCTGGCCCATTGCAAAACTCCACCTATTCTCACCGTTTCTTTCAACAAATGAGCAACCCTTTTGTTTCCCACTACAACACCATGATCAGAGCTTATTCCTTCAGTGACTCACCTCAAAAGGCTCTTTTTTTATACCGAGATATGAGAAGAACAGGCATTGCTGCAAACCCTTTAACGTCTTCCTTTGTTGTTAAGTCATGTATCAAGTTTCTGTATCTTCTTGGAGGTGTTCAGGTTCATTGCAACATCTTCAAAGATGGACATCAATCAGATAGCCTTTTGCTTACTGCTGTCATGGATTTGTATTCAAATTGTCAGAAATATGATGATGCGTGTAAGGTGTTCGATGAGATGCCTCAGAAGGATACTGTTGCTTGGAATGTGATGATTTCTTGTTGTATTCGAAATAATCGGACACGGGATGCATTGAACTTGTTTGATGTTATGCAGACGGAAAGGTATGAATGTGTGCCTGATGATGTTACTTGTTTACTTCTTCTTCAAGCATGTGCTCGTTTGAATGCGTTGGAGTTCGGTGAACGGATTCATAGTTATATTATGGTACATGGTTATGGAGGTGCTCTCAATTTGTGTAGTTCTCTCATATCAATGTATTCACGGTGTGGTTGTTTAGATAAGGCTTATGATGTGTTTATGGGAATGAAGAACAAAACTGTGGTTTCATGGAGTGCAATGATATCTGGTTTGGCAGTGAATGGATATGGGAGAGAAGCTATTGAAGCATTTGAAGAGATGCTGAGAAATGGTGTTCAGCCTGATGATCATACATTCACAGGTGTCCTTTCTGCTTGCAGTCATTCTGGATTGTTAGATGAGGGAGTGTCGTTTTTTGACAGAATGATCTCGGAGTTTGGAATAACTCCAGCCATCCACCATTATGGCTGCATGGTCGATCTCTTGGGCCGTGCTGGATTACTTGATAAGGCCTACCAGCTTATTACGTCCATGGAGGTAAAGTCAGATTCCACAGTGTGGAGAACCCTGCTCGGAGCTTGCAGAATTCACGGTCATGTTACACTTGGGGAACAAGTAATTGAAcatttgattgaattgaaaGCTCAAGAAGCTGGAGATTATGTTTTGCTTCTGAATCTTTATTCATCAGCTGGACACTGGGAAAAGGTAGCAGAAGTGAGAAAACTAATGAGagaaaaatcaatccaaactaCACCTGGTTGTTGCACAATTGAACTGAAAGGAGTTGTGCACGAGTTTGTTGTGGATGATAATTCACATTCAAGAAAAGTTGAAATTTATAACACACTCGATGAGATTAATAAGCAGCTGAAGATAGCTGGTTATGTTGTTGAACTTTCATCTGAACTACATAAGATAGATGACAAAGAAAAAGGGTATGCACTCTCTTATCATAGTGAAAAACTAGCTATTGCTTTTGGGGTTCTTGTTACTCCACCAGGCACAACATTGAGAGTGGCCTCTAATCTCCGGATATGTATTGATTGCCACAATTTTCTGAAACTTTTTTCTGCGGCTTATAACCGTGATGTAATTCTCAGAGATCATAAGCGGTTTCACCACTTCCGGCGAGGGCATTGCTCCTGTAATGACTATTGGTAG 1869 0.4013 MSPLWSSCSSRSLLAATNLQFPSYFTAAISIATPQNQSTHIPFFNKESIISTIKSISNKTHLLQIHAHILRTTLIQDPAVSHHFLCRVALSGPLQNSTYSHRFFQQMSNPFVSHYNTMIRAYSFSDSPQKALFLYRDMRRTGIAANPLTSSFVVKSCIKFLYLLGGVQVHCNIFKDGHQSDSLLLTAVMDLYSNCQKYDDACKVFDEMPQKDTVAWNVMISCCIRNNRTRDALNLFDVMQTERYECVPDDVTCLLLLQACARLNALEFGERIHSYIMVHGYGGALNLCSSLISMYSRCGCLDKAYDVFMGMKNKTVVSWSAMISGLAVNGYGREAIEAFEEMLRNGVQPDDHTFTGVLSACSHSGLLDEGVSFFDRMISEFGITPAIHHYGCMVDLLGRAGLLDKAYQLITSMEVKSDSTVWRTLLGACRIHGHVTLGEQVIEHLIELKAQEAGDYVLLLNLYSSAGHWEKVAEVRKLMREKSIQTTPGCCTIELKGVVHEFVVDDNSHSRKVEIYNTLDEINKQLKIAGYVVELSSELHKIDDKEKGYALSYHSEKLAIAFGVLVTPPGTTLRVASNLRICIDCHNFLKLFSAAYNRDVILRDHKRFHHFRRGHCSCNDYW 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03698 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 385 IPR002885 -
Tsu04g03698 622 Pfam E motif 432 494 IPR046848 -
Tsu04g03698 622 Gene3D Tetratricopeptide repeat domain 270 381 IPR011990 GO:0005515
Tsu04g03698 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Tsu04g03698 622 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 42 614 - -
Tsu04g03698 622 TIGRFAM PPR: pentatricopeptide repeat domain 214 246 IPR002885 -
Tsu04g03698 622 TIGRFAM PPR: pentatricopeptide repeat domain 352 385 IPR002885 -
Tsu04g03698 622 TIGRFAM PPR: pentatricopeptide repeat domain 288 313 IPR002885 -
Tsu04g03698 622 TIGRFAM PPR: pentatricopeptide repeat domain 317 350 IPR002885 -
Tsu04g03698 622 TIGRFAM PPR: pentatricopeptide repeat domain 115 146 IPR002885 -
Tsu04g03698 622 TIGRFAM PPR: pentatricopeptide repeat domain 186 211 IPR002885 -
Tsu04g03698 622 Pfam PPR repeat 389 415 IPR002885 -
Tsu04g03698 622 Pfam PPR repeat 114 143 IPR002885 -
Tsu04g03698 622 Gene3D Tetratricopeptide repeat domain 88 167 IPR011990 GO:0005515
Tsu04g03698 622 Gene3D Tetratricopeptide repeat domain 168 269 IPR011990 GO:0005515
Tsu04g03698 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Tsu04g03698 622 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Tsu04g03698 622 Pfam PPR repeat family 211 262 IPR002885 -
Tsu04g03698 622 Pfam PPR repeat family 314 362 IPR002885 -
Tsu04g03698 622 Pfam DYW family of nucleic acid deaminases 530 622 IPR032867 GO:0008270
Tsu04g03698 622 PANTHER OS08G0434000 PROTEIN 42 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03698 Tsu-Chr4 46050506 46052374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03698 44 622 Glycoside Hydrolase AT3G49170 34.983 2.06e-119 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03698 - - lja:Lj0g3v0169319.1 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03698 04 46050506 46052374 Tsu04g03698 04 46050506 46052374 ECH
Tsu05g01869 05 20402235 20404606 Tsu04g03698 04 46050506 46052374 PCT