Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01803 ATGTTGGAGGGTCGTTCTTGTGTTGTTCCGAGGTTGTTTTGTAGCACTTGTGAAACAGAGAACGATTGGTCTTACATGAAGTACATGCTGGATTTAGACATAAAAAATGGCAAAAGACCAATGGAAATTGATGCTGCTGAGGATGAACATCATCCTAGGAAGTGTACTAAGATGTTGGAATCTTGTCACATAGTTGAAACGGTTTGTATCTCGTTTCAACAGCCTAAGGATTCTGATGATTCTCAAATGAATCAGAAAACCATTGAGCCATTGAATGATGGTGATTCAATGGATTCATCAGATTCTGGTATTCAGCAATCTGATGAGGAACAGCATGCTGGAGATTCGTCGGATTCTGGTTCACTTTTGCCGCGGATGAACCGAGACAGCTCAATTGCTTGTCTTAGTCGCTGTTCAAGGTCTGATTATGGTTCGCTTGCTTCTTTGAATAGTAGCTTTCGTAACATAATCCGAAGTGGCGAGCTCTATAGATGGAGGAGAATAAATGGTATAAAGGAACATTGGGTTTATTTCTCATGTGCACTTCTTGAATGGGAAGCGTATGATCCTATTCGTCAAAGGTGGATGCATTTGCCGAGGATGGCTTCAAATGAATGCTTCATGTGTTCTGATAAGGAATCTTTAGCTGTAGGAACCGAACTTCTTGTATTTGGCAGGGAGCTTAGATCTCATGTGATTTATAGATACAGTCTTTTGACTAACTCATGGTCCTCAGGAATGAGAATGAATGCTCCAAGGTGTTTGTTCGGCTCCGCGAGCCTCGGAGAGCTTGCAATATTAGCAGGTGGCTGTGATTCGGAGGGACGTATACTTGACTCAGCTGAGCTATACAACTCCGAGACGCAAACATTTGAACTACTCCCGGCAATGAAAAAGCCACGGAAGATGTGTTCTGGTGTATTCATGGATGGAAAATTTTACGTTGTAGGCGGAATCGGAGGACGTGAATCGAAGCTTCTTACGTGCGGTGAAGAGTACAATTTACAGACTAGAACATGGACAGAGATTCCTAACATGTCCCCTGGACGAAGTACTAGGGGTTCTGAGATGCCTGCTGCAACCGAAGCACCGCCTCTCATTGCTGTTGTAAATAATGAATTGTATGCTGCTGATTACGCTGACATGGAAGTTAAAAAGTATGACAAGGAAAGAAAATTGTGGATTACTATTGGTAGACTTCCGGAACGAGCAATGTCGATGAATGGTTGGGGTCTTGCATTCAGGGCATGTGGAAATATGCTTATTGTCATCGGTGGACCTAGGACTCATGGTGAAGGTTACATTGAACTCAATTCTTGGGTCCCTAGCGAAGGACCTCCGCAATGGCGTTTACTTGATCGAAAACGATCCGGTAACTTTGTTTATAATTGCGCTGTGATGGGTTGCTGA 1410 0.4326 MLEGRSCVVPRLFCSTCETENDWSYMKYMLDLDIKNGKRPMEIDAAEDEHHPRKCTKMLESCHIVETVCISFQQPKDSDDSQMNQKTIEPLNDGDSMDSSDSGIQQSDEEQHAGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLASLNSSFRNIIRSGELYRWRRINGIKEHWVYFSCALLEWEAYDPIRQRWMHLPRMASNECFMCSDKESLAVGTELLVFGRELRSHVIYRYSLLTNSWSSGMRMNAPRCLFGSASLGELAILAGGCDSEGRILDSAELYNSETQTFELLPAMKKPRKMCSGVFMDGKFYVVGGIGGRESKLLTCGEEYNLQTRTWTEIPNMSPGRSTRGSEMPAATEAPPLIAVVNNELYAADYADMEVKKYDKERKLWITIGRLPERAMSMNGWGLAFRACGNMLIVIGGPRTHGEGYIELNSWVPSEGPPQWRLLDRKRSGNFVYNCAVMGC 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01803 469 SUPERFAMILY Kelch motif 182 466 IPR015915 GO:0005515
Tsu05g01803 469 Gene3D - 170 460 IPR015915 GO:0005515
Tsu05g01803 469 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 1 469 - -
Tsu05g01803 469 SMART kelc_smart 220 263 IPR006652 GO:0005515
Tsu05g01803 469 SMART kelc_smart 264 311 IPR006652 GO:0005515
Tsu05g01803 469 SMART kelc_smart 312 360 IPR006652 GO:0005515
Tsu05g01803 469 Pfam Kelch motif 252 297 IPR006652 GO:0005515
Tsu05g01803 469 Pfam Kelch motif 300 347 IPR006652 GO:0005515
Tsu05g01803 469 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 469 - -
Tsu05g01803 469 MobiDBLite consensus disorder prediction 75 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01803 Tsu-Chr5 19391599 19393008 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01803 - - gmx:100818865 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01803 05 19391599 19393008 Tsu05g01803 05 19391599 19393008 ECH
Tsu05g01803 05 19391599 19393008 Tsu04g03679 04 45848739 45852692 PCT