Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03679 ATGTTGAAAATGCCAAGTGAAATTCCACATGATCTCATGGAAGAAGATACTGAGAAGAATGTTGAACATCATGGAGGTGACTCACGTTTGCTTATTCCTCAGATCACTCGCGATGCATCAATTCATTGTCTACTTCGATTGTCAAGGTCTGATTATGGCTCAATTGCTTTATTAAACCGAACTTTCCAGTCGCTTATTAAGACTGGAGAATTGTATCAACTTAGGCGGAAAATGGGCATAGTTGAACATTGGATTTACTTTTCATGTGATGTCCTCAAATGGGAGGCCTTCGATACAAATCGTGATCGATTGATCCAATTGCCTGAAATGAGTTCCAATACATGTTTTATGCTTTCAGACAAGGAGTCATTAGCTGTTGGTACAGAGCTTCTTGTTTTTGGAAGGGAATTAACGGGTCCTACCATCTATAAATATAGCATTCTGACAAATTCATGGTTGAAGGGAATGAAAATGAATACTCCAAGATGCTTGTTTGGTTCTGCAAGTAATGGAGAAATAGCAATATTAGCTGGTGGTTGTGATCAACTTAGCAACATATTGAGATCTTCTGAGCTTTATAATTCAGATACCGGCACTTGGGAGATTCTTCCAGACATGAACACACCAAGGAAAATGTGTTCTGCTGTGTTTATGGATGGAAAATTTTATGTCCTCGGTGGGGTTGGAGTTGACAAAACATCACAGTTAACCTGTGGTGAGGAATTTGATTTGAAGACACGAAAGTGGCGCAAAATACCTAATATGTGCCCCCCTCGAAATGGAAGAGATGGTGGGAATTCGTTCTTTGGTGAGGCACCTCCTTTAATTGCAGTTGTAAACAATGTATTGTTTGCTGCTGATTATGCACAACAAGTTGTAAAAAGATATGTTAAAGATCAAAACTCATGGGTCACCATTGGAAGCCTTCCTAATCGAGTAGCCTCTTTTAATGGATGGGGAATGGCCTTCAAATCATGCGGAGATAAGCTAGTTGTCCTTGGAGGTCTTAGTCTTCATGGTAAAATGGTAACAGAAATCAATGCTTGGGTAGTAGACGAAGGCGCACCACAATGGAATTCGCTTGCCATAACTCAATCAGGGAGCTTTGTGTTTAATTGTGCTCGTAACCGCCATTCTTGTTTGATTCTTTTTCGTTCTCTCTCGTTTTCGATTGGCTTTCTACAGCGAACATGGCAGAACATAGCACATTTGTTCAACCATCCATCCCCAAGTGTGGTTACAGCTCCGGCGAATGCAATGGCAGAGCAACTCCAGTTAGCCAACGAGAGCAAGCTCCGTGACCTGAAGGTGAAGAATTACTTGTTTCAGGCCATTGATCGATCGATCTTGGAGACGATCTTGACACGAGAAACCTCGAAGGATATTTGGGATGCGATGAAGCGGAAGTATCAAGGTTCCTCAAAGGTCAAGTGTGCTCAATTACAGGCTTTGCGGCGAGAGTTTGAGATTCTTGCAATGGGGGAGGGTGAAACGGTGAAAGAATACTTTGCAAGAACTCTTGCAATAGCAAATCGCATGACTGCTCATGGTGAAAGAATGGAACAGCTTGTAATTGTTGAAAAGATTCTTAGATCAATGACTCCAAAGTTCAACTACGTGGTGTGTTCAATTGAAGAATCAAACGATGTCACACTGCTATCTGTTGATGAATTGCAAAGCAGTCTCATAGTACATGAACAGAGAATGAAAAAGCAGAGAGATCACATTGAAGAACAAGCTCTTAAAGCCTCAAGCAGTGGTAGAGGTAGCGGAAGAAGCTCACAGAGTAAAGAGTTTGTGGAATGTTTCAAGTGTCATAAACTTGGGCATTACAAGAATTAA 1842 0.4121 MLKMPSEIPHDLMEEDTEKNVEHHGGDSRLLIPQITRDASIHCLLRLSRSDYGSIALLNRTFQSLIKTGELYQLRRKMGIVEHWIYFSCDVLKWEAFDTNRDRLIQLPEMSSNTCFMLSDKESLAVGTELLVFGRELTGPTIYKYSILTNSWLKGMKMNTPRCLFGSASNGEIAILAGGCDQLSNILRSSELYNSDTGTWEILPDMNTPRKMCSAVFMDGKFYVLGGVGVDKTSQLTCGEEFDLKTRKWRKIPNMCPPRNGRDGGNSFFGEAPPLIAVVNNVLFAADYAQQVVKRYVKDQNSWVTIGSLPNRVASFNGWGMAFKSCGDKLVVLGGLSLHGKMVTEINAWVVDEGAPQWNSLAITQSGSFVFNCARNRHSCLILFRSLSFSIGFLQRTWQNIAHLFNHPSPSVVTAPANAMAEQLQLANESKLRDLKVKNYLFQAIDRSILETILTRETSKDIWDAMKRKYQGSSKVKCAQLQALRREFEILAMGEGETVKEYFARTLAIANRMTAHGERMEQLVIVEKILRSMTPKFNYVVCSIEESNDVTLLSVDELQSSLIVHEQRMKKQRDHIEEQALKASSSGRGSGRSSQSKEFVECFKCHKLGHYKN 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03679 613 MobiDBLite consensus disorder prediction 1 24 - -
Tsu04g03679 613 MobiDBLite consensus disorder prediction 8 24 - -
Tsu04g03679 613 SUPERFAMILY Kelch motif 91 373 IPR015915 GO:0005515
Tsu04g03679 613 MobiDBLite consensus disorder prediction 574 594 - -
Tsu04g03679 613 Pfam gag-polypeptide of LTR copia-type 433 572 - -
Tsu04g03679 613 Pfam Kelch motif 209 255 IPR006652 GO:0005515
Tsu04g03679 613 Pfam Kelch motif 161 207 IPR006652 GO:0005515
Tsu04g03679 613 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 14 374 - -
Tsu04g03679 613 Gene3D - 82 383 IPR015915 GO:0005515
Tsu04g03679 613 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 14 374 - -
Tsu04g03679 613 SMART kelc_smart 173 220 IPR006652 GO:0005515
Tsu04g03679 613 SMART kelc_smart 129 172 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03679 Tsu-Chr4 45848739 45852692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03679 30 254 Miscellaneous Gene Families AT4G33900 26.872 1.24e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03679 - - cam:101513734 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03679 04 45848739 45852692 Tsu04g03679 04 45848739 45852692 ECH
Tsu05g01803 05 19391599 19393008 Tsu04g03679 04 45848739 45852692 PCT