Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g01260 ATGGCAATGAGCAACAACATCATAGGATTCATAAACCTACTTGCTGTAATAATCTCAATCCCAATCATTGGTGCTGGAATCTGGCTAACAAACGAACCAGCAGACACATGTATCAAATTTCTCCAATGGCCAGTAATAATCCTAGGTGTTCTTCTCTTAATAGTCTCTCTAGCTGGTCTCATTGGTTCTTTTTGGAGAATCTCATGTCTTCTCATATTCTACCTAGTTGCAATGCTTGTTCTCATTATACTTCTTGTTtgtttggttgtttttgtttatatgGTCACTGTTCGTGGTCATGGTATGATTGAACCTAATAGAGCTTATTTGGAGTACCGTTTGGACgatttttctgggtttttgaAAAGAAGAGTTAGAAGTTCTTTTAAATGGGATGCTATTAGGAGTTGTCTTAGTGAAACTAATATGTGTGCTGAGTTGAATCAGAATTTCAGAATGGCTCAGGATTTCTTTAATGCTCATCTTACACCAATGCAGTCAGGGTGCTGCAAACCACCAACACAATGTGCATACACATTTGTGAACCCAACTTATTGGATCAGTCCAATAAACAATGCAGCAGATATGGATTGTCTTCAATGGAGCAATGACCAAACACAACTTTGCTACAATTGTGACTCATGCAAAGCTGGTTTGTTGGCAAATCTTAGAAAGGAATGGAAAAGAGCTAATGTGATTTTGATCATCACTGTTATTGTTTTAATTGTGGTTTATTTGATTGGGTGTTTTGCTTTTAGGAATGCCAAAACTGAAGATCTCTTTCGCAAATACAAACAAGGCTATACTTGA 810 0.3556 MAMSNNIIGFINLLAVIISIPIIGAGIWLTNEPADTCIKFLQWPVIILGVLLLIVSLAGLIGSFWRISCLLIFYLVAMLVLIILLVCLVVFVYMVTVRGHGMIEPNRAYLEYRLDDFSGFLKRRVRSSFKWDAIRSCLSETNMCAELNQNFRMAQDFFNAHLTPMQSGCCKPPTQCAYTFVNPTYWISPINNAADMDCLQWSNDQTQLCYNCDSCKAGLLANLRKEWKRANVILIITVIVLIVVYLIGCFAFRNAKTEDLFRKYKQGYT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g01260 269 PANTHER TETRASPANIN/PERIPHERIN-RELATED 1 268 - -
Tsu05g01260 269 PANTHER TETRASPANIN-8-RELATED 1 268 IPR044991 GO:0009734|GO:0016021
Tsu05g01260 269 PRINTS Transmembrane four family signature 6 29 - -
Tsu05g01260 269 PRINTS Transmembrane four family signature 38 64 - -
Tsu05g01260 269 PRINTS Transmembrane four family signature 65 93 - -
Tsu05g01260 269 Pfam Tetraspanin family 6 250 IPR018499 GO:0016021
Tsu05g01260 269 ProSitePatterns Transmembrane 4 family signature. 49 71 IPR018503 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g01260 Tsu-Chr5 11362956 11365131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g01260 1 269 Miscellaneous Gene Families AT5G46700 67.286 3.48e-130 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g01260 - - gmx:100795775 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g01260 05 11362956 11365131 Tsu05g01260 05 11362956 11365131 ECH
Tsu05g01260 05 11362956 11365131 Tsu04g02941 04 35795606 35797563 PCT