Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00973 ATGGATGTTCACCAGAAAAATGTATGTTCTGATCACTCCGGAAAATCTTCAAAAACGAAGAACCAAAAGCAGGATTCACAGTCACAACCTTCACCGTACTTAACAAACGTGGTTTTCTTCGGTCTCTTCTTCTCTGTCGCATACTATCTTCTTCAACAGTGGCGTGAGAAGATTCGAACCTCTACACCTCTCCATGTCCTCACAATTTCTGAGATGGTTGCTGTTGTTTCCCTCATTGCTTCCATTATCTACCTTATGGCTTTCTTTGGCATTGTCTTCATCCTTCATCCATTTTCTACTCACAACGAAGGAGAGGAAGATGAAGCCATCATTGAAAAATACTCCGGCTCATGCCTTGCTGGAGTGTCTCCCAAGCTACCTCGGCTGCCGCCAAAAATCTTAGTTGAAAAAGTTGCCCCAGCACCGGTGGTCCATTCCATGGAAGACGAAGAAGTTGTTTGTGCAGTGGTATCAGGATCGATTCCATCTTACTCGCTTGAATCAAAGTTCGGAGATTGCAAACGTGCAGCTGCTATTCGGAACCAAGCAGTGGAGAGAGTGACCAGAAGGTCCCTTGAGGGTTTACCAATGGAAGGTTTTGATTACGATTCTATATTAGGACAGTGTTGTGAGATGCCGATAGGGTTTGTTCAGATTCCGATGGGAGTTGCTGGTCCTTTGTTGCTCGGCGAGAATGAGTACACGGTTCCAATGGCAACGACTGAAGGTTGTTTGGTTGCAAGTACTAATAGAGGCTGCTGTAAAGCTATTTACGTTTCTGGTGGTGCTTCTTCCGTTGTCCTTCGTGATGGCATGACTAGAGCCCCCGCTGTTAGATTCAACAGTGCCAAAAGAGCTTCTGAGTTAAAGTTCTTTTTAGAAGATcctcaaaattttgattccCTCTCTCATACTTTCAACAaGTCAAGTAGATTTGCGAGATTGCAGAGCATTAAAGCTAATATGGCAGGAAAGAATTTATACATTAGATTCACTTGTTCAACTGGTGATGCAATGGGGATGAACATAGTATCAAAAGGTGTACAAAATGTacttgattttcttcaaatcgATTTTCCTGATATGGATGTTATTGGTATATCAGGAAACTTTTGTTCGGACAAGAAAGCTGCGGCAGTTAATTGGATTGAAGGGAGAGGGAAATCTGTGGTGTGTGAGGCTGTGATTAAGGAAGAGGTGGTgaagaaagtgttgaagacaagTGTTGCGTCTTTGGTTGAGCTTAACATGCTCAAAAACCTTACTGGTTCAGCCATGGCAGGTGCTCTTGGCGGATTCAATGCACATGCTAGTAATATTGATTCTGCTATTTACTTGGCTACAGGTCAAGATCCTGCTCAGGATGTTGAGAGTTNGGACAAGAAAGCTGCGGCAGTTAATTGGATTGAAGGGAGAGGGAAATCTGTGGTGTGTGAGGCTGTGATTAAGGAAGAGGTGGTgaagaaagtgttgaagacaagTGTTGCGTCTTTGGTTGAGCTTAACATGCTCAAAAACCTTACTGGTTCAGCCATGGCAGGTGCTCTTGGCGGATTCAATGCACATGCTAGTAATATTGATTCTGCTATTTACTTGGCTACAGGTCAAGATCCTGCTCAGGATGTTGAGAGTTCTCACTGTATGACAATGATGGAAGCTGTGAATGATGGAAAAGACCTTCATATCTCTGTCACTATGCCTTGCATTGAGGTGGGCACAGTTGGAGGGGGCACACAACTTGCATCACAATCAGCTTGCTTGAATTTACTCCGTGTTAAGGGTGCTAGTAAAGAGTCACCAGGAGCAAATTCTAGGAAACTTGCAACTATTGTAGCTGGTTCAGTCTTAGCAGGAGAGCTCTCACTGATGTCTGCAATTGCTGCTGGACAACTTGTTAAAAGCCACATGAAATACAACAGATCTAGTAAAGATGTCTCCAAAGTTGTATCATGA 1953 0.4194 MDVHQKNVCSDHSGKSSKTKNQKQDSQSQPSPYLTNVVFFGLFFSVAYYLLQQWREKIRTSTPLHVLTISEMVAVVSLIASIIYLMAFFGIVFILHPFSTHNEGEEDEAIIEKYSGSCLAGVSPKLPRLPPKILVEKVAPAPVVHSMEDEEVVCAVVSGSIPSYSLESKFGDCKRAAAIRNQAVERVTRRSLEGLPMEGFDYDSILGQCCEMPIGFVQIPMGVAGPLLLGENEYTVPMATTEGCLVASTNRGCCKAIYVSGGASSVVLRDGMTRAPAVRFNSAKRASELKFFLEDPQNFDSLSHTFNKSSRFARLQSIKANMAGKNLYIRFTCSTGDAMGMNIVSKGVQNVLDFLQIDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVASLVELNMLKNLTGSAMAGALGGFNAHASNIDSAIYLATGQDPAQDVESXDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVASLVELNMLKNLTGSAMAGALGGFNAHASNIDSAIYLATGQDPAQDVESSHCMTMMEAVNDGKDLHISVTMPCIEVGTVGGGTQLASQSACLNLLRVKGASKESPGANSRKLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVSKVVS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00973 650 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 571 578 IPR023076 GO:0004420
Tsu05g00973 650 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 271 387 IPR009023 -
Tsu05g00973 650 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 11 459 - -
Tsu05g00973 650 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 459 650 - -
Tsu05g00973 650 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 149 640 IPR002202 GO:0004420|GO:0015936
Tsu05g00973 650 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 330 344 IPR023076 GO:0004420
Tsu05g00973 650 Gene3D - 470 643 IPR023074 GO:0004420
Tsu05g00973 650 Gene3D - 383 469 IPR023074 GO:0004420
Tsu05g00973 650 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 625 638 IPR023076 GO:0004420
Tsu05g00973 650 Gene3D - 143 219 IPR023282 GO:0004420
Tsu05g00973 650 Pfam Hydroxymethylglutaryl-coenzyme A reductase 459 640 IPR002202 GO:0004420|GO:0015936
Tsu05g00973 650 Pfam Hydroxymethylglutaryl-coenzyme A reductase 177 458 IPR002202 GO:0004420|GO:0015936
Tsu05g00973 650 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 134 460 IPR009029 GO:0015936|GO:0016616
Tsu05g00973 650 Gene3D - 271 382 IPR009023 -
Tsu05g00973 650 MobiDBLite consensus disorder prediction 9 29 - -
Tsu05g00973 650 CDD HMG-CoA_reductase_classI 150 640 IPR004554 GO:0004420|GO:0005515|GO:0008299
Tsu05g00973 650 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 419 445 IPR002202 GO:0004420|GO:0015936
Tsu05g00973 650 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 236 256 IPR002202 GO:0004420|GO:0015936
Tsu05g00973 650 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 368 393 IPR002202 GO:0004420|GO:0015936
Tsu05g00973 650 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 209 230 IPR002202 GO:0004420|GO:0015936
Tsu05g00973 650 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 328 346 IPR002202 GO:0004420|GO:0015936
Tsu05g00973 650 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 11 459 IPR002202 GO:0004420|GO:0015936
Tsu05g00973 650 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 459 650 IPR002202 GO:0004420|GO:0015936
Tsu05g00973 650 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 467 629 IPR009029 GO:0015936|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00973 Tsu-Chr5 8450472 8453034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g00973 422 646 Lipid Metabolism Gene Families AT1G76490 73.160 3.49e-104 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00973 K00021 - gmx:100790033 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00973 05 8450472 8453034 Tsu04g02712 04 30926227 30929637 ECH
Tsu05g00973 05 8450472 8453034 Tsu05g00973 05 8450472 8453034 ECH