Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02712 ATGGAAATTCGCCGGAGACAATCTTCACCGACACCGGTTTCTTCCGGCGAACAACTCAAAGCACAGAAGCTTACAACTACCGATTCACAAACCGTTTCTCTCTGCGTCGCTAACGCTGTTTTCTTCGGTTTATTCTTCTCCGTCGCGTATTTTCTTCTCCACCGTTGGCGTGAGAAGATCAGAACCTCGACACCTCTTCATGTTGTCACCGCATCGGAAACCGCCGCCATTGTTTCTCTTGTTGCTTCCGCTGTTTATCTTCTAGGTTTCTTCGGTATTGGATCTCGTACTTCCTTCCCCGATGATCTCTCCGACGAAGAGATCCTCGCGAGAGAAGATTCACGGAAGCCAGGACCGTGTCCGGCGGCACTTGTTGACACCGACGTGATGCCGGCGCCGGTAAATGTGGCTCCACCGGCGAAGATCTATGACGTTGCACCGGTGAATCTCTCAGAGGAAGATGAGGAAATGGTGAAATCGGTGGTTTCCGGTTCAATTCCGTCGTATTCATTAGAATCTAGACTTGCTGATTGCCGGAAAGCGGCAGCAATTCGACGTTCGGCGGTTCAAATGATAACTGGAAAATCGTTGGAAGGTTTACCGTTGGAAGGTTTTGATTACGATTCGATATTAGGACAGTGTTGTGAGATGCCGATAGGGTTTGTTCAGATTCCGGTTGGTGTTGCGGGTCCATTGTTGTTAGATGGAGTTGAGTACACTGTACCAATGGCTACAACTGAGGGTTGTTTGGTTGCAAGTACCAATAGAGGTTGTAAAGCTATTCATGCTTCTGGTGGAGCTTCATCTGTTTTGCTTAGAGATGGAATGACTAGAGCACCTGTTGTTAGGTTTTCGTCTGCGAAAAGAGCAGCTCAGTTGAAGTTTTTCTTGGAAGATCCGCTTAATTTTGATGCACTTGCTGTCACTTTCAACAAGTCAAGCAGATTCGCTAGATTGCAGAGCATTCAACCTACTATTGCTGGCAAGAATTTGTACATTAGATTCCGTTGCAGTACAGGTGATGCCATGGGGATGAACATGGTATCAAAAGGAGTTCAAAATGTCCTTGATTTTCTTCAGAGTGACTTCCCTGACATGGATGTCATTGGAATCTCTGGAAATTTCTGTTCCGACAAGAAAGCGTCGGCTGTGAATTGGATTGAAGGTCGTGGTAAGTCTGTGGTGTGTGAAGCTGTAATTAAGGAAGAAGTGGTgaagaaagtgttgaagactAATGTGGAGGCCTTGTGTGAGCTTAACATGCTTAAGAACCTAACTGGTTCAGCCATTGCTGGTGCTCTTGGTGGATTCAATGCTCATGCTAGCAATATTGTCTCTGCTATCTACATAGCCACTGGTCAAGATCCTGCTCAGAATGTGGAGAGTTCTCACTGTATTACCATGATGGAAGCTGTAAATGATGGAAAAGACCTTCACATTTCTGTCACCATGCCTTCCATTGAGGTTGGTACTGTGGGAGGAGGAACACAACTCGCATCACAGTCAGCTTGCTTAAATTTACTTGGTGTTAAGGGTGCCAGCAAAGATTCACCAGGTGCAAATTCTAGGCTACTAGCCACCATTGTTGCCGGTTCAGTCCTCGCCGGCGAGCTATCACTCATGTCTGCAATTGCAGCCGGGCAACTAGTTAAGAGTCACATGAAATACAACAGATCTAGCAAGGATATCACCAAAATAGTCTCATGA 1707 0.4575 MEIRRRQSSPTPVSSGEQLKAQKLTTTDSQTVSLCVANAVFFGLFFSVAYFLLHRWREKIRTSTPLHVVTASETAAIVSLVASAVYLLGFFGIGSRTSFPDDLSDEEILAREDSRKPGPCPAALVDTDVMPAPVNVAPPAKIYDVAPVNLSEEDEEMVKSVVSGSIPSYSLESRLADCRKAAAIRRSAVQMITGKSLEGLPLEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGVEYTVPMATTEGCLVASTNRGCKAIHASGGASSVLLRDGMTRAPVVRFSSAKRAAQLKFFLEDPLNFDALAVTFNKSSRFARLQSIQPTIAGKNLYIRFRCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKASAVNWIEGRGKSVVCEAVIKEEVVKKVLKTNVEALCELNMLKNLTGSAIAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDITKIVS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02712 568 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 154 558 IPR004554 GO:0004420|GO:0005515|GO:0008299
Tsu04g02712 568 CDD HMG-CoA_reductase_classI 155 558 IPR004554 GO:0004420|GO:0005515|GO:0008299
Tsu04g02712 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 334 348 IPR023076 GO:0004420
Tsu04g02712 568 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 275 391 IPR009023 -
Tsu04g02712 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 214 235 IPR002202 GO:0004420|GO:0015936
Tsu04g02712 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 241 261 IPR002202 GO:0004420|GO:0015936
Tsu04g02712 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 332 350 IPR002202 GO:0004420|GO:0015936
Tsu04g02712 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 372 397 IPR002202 GO:0004420|GO:0015936
Tsu04g02712 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 423 449 IPR002202 GO:0004420|GO:0015936
Tsu04g02712 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 477 498 IPR002202 GO:0004420|GO:0015936
Tsu04g02712 568 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 568 IPR002202 GO:0004420|GO:0015936
Tsu04g02712 568 Pfam Hydroxymethylglutaryl-coenzyme A reductase 182 558 IPR002202 GO:0004420|GO:0015936
Tsu04g02712 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 489 496 IPR023076 GO:0004420
Tsu04g02712 568 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 154 558 IPR002202 GO:0004420|GO:0015936
Tsu04g02712 568 Gene3D - 225 545 IPR023074 GO:0004420
Tsu04g02712 568 Gene3D - 150 224 IPR023282 GO:0004420
Tsu04g02712 568 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 149 547 IPR009029 GO:0015936|GO:0016616
Tsu04g02712 568 Gene3D - 275 391 IPR009023 -
Tsu04g02712 568 MobiDBLite consensus disorder prediction 7 22 - -
Tsu04g02712 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 543 556 IPR023076 GO:0004420
Tsu04g02712 568 MobiDBLite consensus disorder prediction 1 22 - -
Tsu04g02712 568 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02712 Tsu-Chr4 30926227 30929637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02712 1 564 Lipid Metabolism Gene Families AT1G76490 68.367 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02712 K00021 - gmx:100815480 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00973 05 8450472 8453034 Tsu04g02712 04 30926227 30929637 ECH
Tsu04g02712 04 30926227 30929637 Tsu04g02712 04 30926227 30929637 ECH