Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00923 ATGGCGACGAGACGATCCACAAACCTCCTCAAACAACTCTCCACCTCGCGCCACCACCTCACCTCACCTCGCTCCGTAACCTACATGCCCCGACCCGGAGACGGAACACCTCGAAACGTAACACTAATCCCCGGCGACGGAATCGGACCTTTAGTAACCGGCGCAGTTGAGCAAGTAATGGAAGCAATGCATGCGCCAGTATACTTCGAGAAATTCGAAGTTCACGGTAACATGAAAACGATGCCAACTGAAGTAATTGAATCGATTAAGAAGAATAAGGTTTGTTTGAAAGGTGGACTTGCTACTCCCATGGGTGGTGGTGTTAGTTCTCTTAATGTGCAATTGAGAAAGGAGCTTGATCTTTATGCTTCGCTTGTTAATTGCTTTAATCTTCCTGGTTTACCGACACGGCATGATAATGTTGATATTGTTGTGATTAGGGAGAATACTGAGGGGGAATATGCCGGACTTGAACATGAGGTTGTTCCTGGTGTTGTCGAAAGCCTTAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCTTATCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATTAAGTATAATGAAATTATTGTAGATAACTGTTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCCAATCTGTATGGTAATCTTGTTGCAAATACAGCGGCAGGCATTGCTGGAGGCACCGGTGTCATGCCCGGAGGTAATGTTGGAGCTGACCACGCTGTATTTGAACAAGGTGCTTCAGCAGGAAATGTTGGTAAGGATAAAGTAGTAAAGGAAAAGAAAGCCAACCCTGTGGCACTCCTCCTTTCGTCTGCAATGATGCTTAGACATCTCCAGTTTCCTGTATTTGCTGAACGATTGGAAAGTGCTGTGAAACGAGTCATTTTAGAGGGCAAATACCGGACAAAGGACCTTGGAGGGACAAGCACCACCCAAGAGGTTGTTGATGCAGTGATAGATGCATTACAATAA 1104 0.4457 MATRRSTNLLKQLSTSRHHLTSPRSVTYMPRPGDGTPRNVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKFEVHGNMKTMPTEVIESIKKNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDKVVKEKKANPVALLLSSAMMLRHLQFPVFAERLESAVKRVILEGKYRTKDLGGTSTTQEVVDAVIDALQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00923 367 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 16 365 - -
Tsu05g00923 367 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 38 366 - -
Tsu05g00923 367 Pfam Isocitrate/isopropylmalate dehydrogenase 39 362 IPR024084 -
Tsu05g00923 367 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 36 365 IPR004434 GO:0006099
Tsu05g00923 367 MobiDBLite consensus disorder prediction 1 37 - -
Tsu05g00923 367 SMART Iso_dh_2 39 362 IPR024084 -
Tsu05g00923 367 MobiDBLite consensus disorder prediction 1 23 - -
Tsu05g00923 367 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 16 365 - -
Tsu05g00923 367 Gene3D Isopropylmalate Dehydrogenase 28 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00923 Tsu-Chr5 8014296 8018739 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00923 K00030 - gmx:100778831 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00923 05 8014296 8018739 Tsu04g03593 04 44979236 44984845 PCT